DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ato and Tcf23

DIOPT Version :9

Sequence 1:NP_731223.1 Gene:ato / 40975 FlyBaseID:FBgn0010433 Length:312 Species:Drosophila melanogaster
Sequence 2:XP_001067558.2 Gene:Tcf23 / 688600 RGDID:1586500 Length:215 Species:Rattus norvegicus


Alignment Length:100 Identity:32/100 - (32%)
Similarity:46/100 - (46%) Gaps:11/100 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 GNDGSFDLADGENQDAAAGGSGKKRRGKQITPVVKRKR-------RLAAN----ARERRRMQNLN 272
            |.|......:...||.....|....|..::|...:|.|       |..|:    ||||.|::.|.
  Rat    26 GTDRKRSRLNRTRQDLWDDTSWSNHRLSRVTSAPRRTRARGTAHGRSEASPENAARERTRVKTLR 90

  Fly   273 QAFDRLRQYLPCLGNDRQLSKHETLQMAQTYISAL 307
            |||..|:..||.:..|.:|||.:.|.:|.:||:.|
  Rat    91 QAFLALQAALPAVPPDTKLSKLDVLVLATSYIAHL 125

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atoNP_731223.1 HLH 253..312 CDD:238036 24/65 (37%)
Tcf23XP_001067558.2 HLH 80..129 CDD:197674 20/45 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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