DRSC/TRiP Functional Genomics Resources

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Protein Alignment ato and l(1)sc

DIOPT Version :9

Sequence 1:NP_731223.1 Gene:ato / 40975 FlyBaseID:FBgn0010433 Length:312 Species:Drosophila melanogaster
Sequence 2:NP_476623.1 Gene:l(1)sc / 30983 FlyBaseID:FBgn0002561 Length:257 Species:Drosophila melanogaster


Alignment Length:142 Identity:39/142 - (27%)
Similarity:61/142 - (42%) Gaps:44/142 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 VNLYTEEFQNFDFDNSALFDDSVEDDEDLMLFSGGEDFDGNDGSFDLADGENQDAAAGGSGKKRR 244
            :.|.|.:.||        ...|.:.:...||.|..:.|:.|:..:                    
  Fly    42 IPLGTSQLQN--------MQQSQQSNVGPMLSSQKKKFNYNNMPY-------------------- 78

  Fly   245 GKQITPVVKRKRRLAANARERRRMQNLNQAFDRLRQYLPCL----------GNDRQLSKHETLQM 299
            |:|:..|.:|      |||||.|::.:|..|..|||:||..          |:.::|||.:||::
  Fly    79 GEQLPSVARR------NARERNRVKQVNNGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRI 137

  Fly   300 AQTYISALGDLL 311
            |..||..|.|:|
  Fly   138 AVEYIRGLQDML 149

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atoNP_731223.1 HLH 253..312 CDD:238036 26/69 (38%)
l(1)scNP_476623.1 HLH <96..146 CDD:278439 16/49 (33%)
Peptidase_C11 <128..218 CDD:304483 11/22 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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