DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ato and twist1a

DIOPT Version :9

Sequence 1:NP_731223.1 Gene:ato / 40975 FlyBaseID:FBgn0010433 Length:312 Species:Drosophila melanogaster
Sequence 2:NP_571059.1 Gene:twist1a / 30175 ZFINID:ZDB-GENE-000210-6 Length:171 Species:Danio rerio


Alignment Length:133 Identity:40/133 - (30%)
Similarity:66/133 - (49%) Gaps:13/133 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 FDNSALFDDSVEDDEDL-MLFSGGEDFD-------GNDGSFDLADGENQDAAAGGS-GKKRRGKQ 247
            |:..|:.:||...:..: .|.:..|:.|       .........:.|:.|:...|. .||.....
Zfish     2 FEEEAMHEDSSSPESPVDSLGNSEEELDRRQPKRVSRKKRASRKNAEDSDSPTPGKRSKKCSNSS 66

  Fly   248 ITPVV---KRKRRLAANARERRRMQNLNQAFDRLRQYLPCLGNDRQLSKHETLQMAQTYISALGD 309
            .:|..   .:.:|:.||.|||:|.|:||:||..||:.:|.|.:|: |||.:||::|..||..|..
Zfish    67 SSPQSLEDLQTQRVMANVRERQRTQSLNEAFASLRKIIPTLPSDK-LSKIQTLKLAARYIDFLCQ 130

  Fly   310 LLR 312
            :|:
Zfish   131 VLQ 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atoNP_731223.1 HLH 253..312 CDD:238036 26/58 (45%)
twist1aNP_571059.1 HLH 78..128 CDD:278439 25/50 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.