DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ato and Tcf21

DIOPT Version :9

Sequence 1:NP_731223.1 Gene:ato / 40975 FlyBaseID:FBgn0010433 Length:312 Species:Drosophila melanogaster
Sequence 2:NP_001027569.1 Gene:Tcf21 / 252856 RGDID:620523 Length:179 Species:Rattus norvegicus


Alignment Length:140 Identity:45/140 - (32%)
Similarity:71/140 - (50%) Gaps:38/140 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 SVEDDEDL----------MLFSGGEDFDGNDGSFDLADGENQDAAA-----GGSGKKRR------ 244
            |:.|.|||          :.....::|..::.|.:  :|.|.:..:     ||.||:|:      
  Rat     5 SLSDVEDLQEVEMLDCDSLKVDSNKEFGTSNESTE--EGSNCENGSPQKGRGGLGKRRKAPTKKS 67

  Fly   245 --------GKQITPVVKRKRRLAANARERRRMQNLNQAFDRLRQYLPCLGNDRQLSKHETLQMAQ 301
                    |||:       :|.|||||||.||:.|::||.||:..||.:..|.:|||.:||::|.
  Rat    68 PLSGVSQEGKQV-------QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLAS 125

  Fly   302 TYISALGDLL 311
            :||:.|..:|
  Rat   126 SYIAHLRQIL 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atoNP_731223.1 HLH 253..312 CDD:238036 28/59 (47%)
Tcf21NP_001027569.1 bHLH_TS_TCF21_capsulin 77..140 CDD:381547 30/66 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.