DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ato and ferd3l

DIOPT Version :9

Sequence 1:NP_731223.1 Gene:ato / 40975 FlyBaseID:FBgn0010433 Length:312 Species:Drosophila melanogaster
Sequence 2:XP_021323873.1 Gene:ferd3l / 110438133 -ID:- Length:145 Species:Danio rerio


Alignment Length:131 Identity:44/131 - (33%)
Similarity:64/131 - (48%) Gaps:21/131 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 DSVEDDEDLMLFSGGEDFDGNDGSFDLADGENQD-------------AAAGGSGKKRRGKQITPV 251
            |.|.|.|.:.|.........|:......:|..||             |.:..:|.......:.| 
Zfish    14 DLVSDVEFMELMPNKSAQASNETHSTDGNGLYQDLTSISTAPTDYFYALSPSTGSPEIAVNMKP- 77

  Fly   252 VKRKR------RLAANARERRRMQNLNQAFDRLRQYLPCLGNDRQLSKHETLQMAQTYISALGDL 310
             ||||      |.|||.|||:||.:||:||||||:.:|....:::||:.|||::|..||:.:.|:
Zfish    78 -KRKRVISTVQRQAANIRERKRMFSLNEAFDRLRRRVPTFAYEKRLSRIETLRLAIVYIAFMTDI 141

  Fly   311 L 311
            |
Zfish   142 L 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
atoNP_731223.1 HLH 253..312 CDD:238036 32/65 (49%)
ferd3lXP_021323873.1 HLH 87..139 CDD:306515 26/51 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.