DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9630 and ddx56

DIOPT Version :9

Sequence 1:NP_649777.1 Gene:CG9630 / 40974 FlyBaseID:FBgn0037561 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001003876.1 Gene:ddx56 / 445399 ZFINID:ZDB-GENE-040825-3 Length:557 Species:Danio rerio


Alignment Length:621 Identity:156/621 - (25%)
Similarity:260/621 - (41%) Gaps:152/621 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LSDAVLQVVQSFGFQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEILQR--RHKET 76
            |.|.:|:.:...|:.|.|.:|..||||.|..||:.|.|.||||||.|:.||   ::||  ..|:|
Zfish    13 LDDRLLKALADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAVP---LIQRVLTSKQT 74

  Fly    77 PWGPKEIGALVISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIAT---LRRETPC 138
            . ..:.:.|:|:.||:||.:|:..::.|.     ..:.::.:.|...|.:.|::.   :..|.|.
Zfish    75 V-REQAVRAVVLVPTKELGQQVQTMIRQL-----TAYCSRDVRVADISGKADLSAQKPILMEKPD 133

  Fly   139 ILVCTPGRLEDLFQRKGDDLNLAAQVKSLEFLVLDEADRLLDLGFKTSVNNILGYLPRQRRTGLF 203
            |:|.||.|::.....:...|:     .|||.||:||||.|...||:..:.|:|.:||:..:..|.
Zfish   134 IVVSTPSRIQAHINAQNLQLH-----SSLEMLVIDEADLLFSFGFEADLKNLLCHLPKIYQAFLM 193

  Fly   204 SATQTTEVTDLIRAGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFLSSPATVIGK 268
            |||...:|..|....|.|||.:.: :.:.:...::||.|....|.|.||:.:...|.. ..:.||
Zfish   194 SATLNDDVQALKELVLHNPVTLKL-QGSQLPDSSQLQQFSIKCEEEDKFLLIYTMLKL-GLIQGK 256

  Fly   269 VMVF----------------FPTCACVEYWAEALPPLLPKRTVLGIHGKMKNKRANVVEKFRNTP 317
            .::|                |...|||      |...||      :|     .|.:::.:|....
Zfish   257 TLLFVSDVDRSYRLKLFLEQFSIPACV------LNSELP------VH-----SRCHIISQFNQGF 304

  Fly   318 QAVLLCTDV---------------------------------LARGLDVPEIEWVVQWDPPSTAS 349
            ...::.:|.                                 ::||:|...:..|:.:|.|::..
Zfish   305 YNYIIASDEQGLESPAGSSQKTQEKGKKKKGTGKKGKDKEYGVSRGIDFHNVSNVINFDFPTSVE 369

  Fly   350 SFVHRVGRTARQGNEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAEDADREKKKLPAVLDQ 414
            |::||||||||..|.|.||.|:..:|        ::...|:...||.::.:...:..:......:
Zfish   370 SYIHRVGRTARADNPGTALSFISHAE--------LSMLSEVENALTGDSNNCVLKPYEFRMEEIE 426

  Fly   415 LHRLQAADKGVYDKGMRAFVSHVRAYTKHECSAILRLKD-----LDLGKMATAY----GLLQLPR 470
            ..|.:..|      ||       |:.||..... .|||:     |:..|:.|.:    ..|||.|
Zfish   427 GFRYRCRD------GM-------RSVTKQAVKE-ARLKEIKQELLNSEKLKTYFEDNPRDLQLLR 477

  Fly   471 ----------MPELKNYQGGGYVAPAFEVDLSKLTYKNAQKEQVRQKKMETYEQTGSWPGQKQHK 525
                      .|.:||       .|.:.:..:..:..|...::.::||:            |...
Zfish   478 HDKDLHPAIIKPHMKN-------VPEYLIPTALKSLVNPLNQRRKRKKV------------KSSG 523

  Fly   526 KRVESWDQTKKAKLDAKSKKELRKAKKQR--KKAAE 559
            ..:.|:.:..:.:...||   .|.|||:|  |||.:
Zfish   524 VMLSSFKKNYRGRNPLKS---FRYAKKRRGEKKAGK 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9630NP_649777.1 DEADc 6..226 CDD:238167 74/216 (34%)
DEXDc 22..232 CDD:214692 71/214 (33%)
HELICc 239..370 CDD:238034 41/179 (23%)
DUF4217 411..470 CDD:290667 16/67 (24%)
ddx56NP_001003876.1 SrmB 8..556 CDD:223587 156/619 (25%)
P-loop_NTPase 8..216 CDD:304359 74/216 (34%)
Helicase_C 238..381 CDD:278689 32/160 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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