DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9630 and Gem3

DIOPT Version :9

Sequence 1:NP_649777.1 Gene:CG9630 / 40974 FlyBaseID:FBgn0037561 Length:613 Species:Drosophila melanogaster
Sequence 2:NP_001261678.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster


Alignment Length:588 Identity:139/588 - (23%)
Similarity:263/588 - (44%) Gaps:106/588 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 FQQMTPVQTAAIPLLLARKDVSAEAVTGSGKTLAFLVPMLEI----LQRRHKETPWGPKEIGALV 87
            |...|.:|.||||:.||:.|:..::.:|:||||.:::.:::.    :.:.|           |::
  Fly    45 FVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPH-----------AMI 98

  Fly    88 ISPTRELARQISEVLAQFLEHEDLEHLNQQLIVGGNSIEEDIATLRRETPCILVCTPGRLEDLFQ 152
            :.||||||.|:.:..  |...:..........:||..:.:|  ..|.....:::.|||||..|::
  Fly    99 VVPTRELAIQVQDTF--FHLCKSFRDFKCSAFIGGTDVAKD--RKRMNESRVIIGTPGRLLHLYE 159

  Fly   153 RKGDDLNLAAQVKSLEFLVLDEADRLLDL-GFKTSVNNILGYLPRQRRTGLFSATQTTEVTDLIR 216
                  |....|..|..|||||||:|... ..:.:|:.::..:|:.|:....|||....:.:.:.
  Fly   160 ------NRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLA 218

  Fly   217 AGLRNPVLVSVKEKASVNTPARLQNFYRIVEPELKFVALLEFLSSPATVIGKVMVFFP-----TC 276
            ..:..|:|:|..|:|:|....| |..|.:.:....    :|.:.....::|::....|     ..
  Fly   219 KVMDKPMLISNSERATVLLGIR-QFVYELPQQNNS----VEEMRLKLQILGQIFNQLPYEQAIIF 278

  Fly   277 ACVEYWAEALPPLLPKRTVLG-----IHGKM-KNKRANVVEKFRNTPQAVLLCTDVLARGLDVPE 335
            |..:..|::....|   |..|     |.|.| :::|.:|.|.:||....:|:.||::|||:|.|.
  Fly   279 ASSQMRADSYKNYL---TASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPH 340

  Fly   336 IEWVVQWDPPSTASSFVHRVGRTARQGNEGNALVFLLPSEDAYVHFLKINQKVELTKLLTEEAED 400
            ...|:..|||....:::||:||..|.|::|.|:.|:...:::. .|.::::|:.....:.|..::
  Fly   341 ANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQ-RFREMSKKIATAWSVLEFPKE 404

  Fly   401 A--------DREKKKLPAVLDQLHRLQAADKGVYDKGMRAFVSHVRAYTKHECSAILRLKDL--- 454
            .        |.||......:.:.:.||.         |...:...|:....:.|:: .|::|   
  Fly   405 PMPNEFNFWDFEKYNFDYYIKEENPLQE---------MPMPIKENRSKENVDASSV-DLENLQKD 459

  Fly   455 ------DLGKMATAYGLLQLPRMPELKNYQGGGYVAPAFEVDLSKLTYKN-----AQKEQVRQKK 508
                  |..|:..|...::..:..||:|              |.:.::.|     .:||.|||.|
  Fly   460 QDGKRRDPDKLPVALENVETQKELELEN--------------LPESSHNNKNLRVKEKEIVRQGK 510

  Fly   509 M-ETYEQTGSWPGQKQHKKRVESWDQTKKAKLDAKSKKELRKAKKQ-----RKKAAEAEASRSGK 567
            : ||..:.|   |.|.:|.     ::.||:...:|.:|::.:.::.     .|...:.:..|:..
  Fly   511 LKETNSKAG---GSKTNKT-----ERRKKSNTPSKLQKQITEVQQTPEITVNKYYMQEDIQRTAD 567

  Fly   568 GKK 570
            ||:
  Fly   568 GKE 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9630NP_649777.1 DEADc 6..226 CDD:238167 54/203 (27%)
DEXDc 22..232 CDD:214692 56/209 (27%)
HELICc 239..370 CDD:238034 38/141 (27%)
DUF4217 411..470 CDD:290667 10/67 (15%)
Gem3NP_001261678.1 SrmB 24..541 CDD:223587 134/557 (24%)
P-loop_NTPase 27..228 CDD:304359 54/203 (27%)
Helicase_C 259..367 CDD:278689 32/110 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451670
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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