DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm2 and MCM2

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_175112.2 Gene:MCM2 / 841056 AraportID:AT1G44900 Length:936 Species:Arabidopsis thaliana


Alignment Length:947 Identity:450/947 - (47%)
Similarity:608/947 - (64%) Gaps:91/947 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DN-PSSPPPNTPSDAAERRDLRAAMTSPVGDFEPFENEDEILGD-QTVRDE------AEEEDGEE 58
            || ||||.  :||.|....|.....||.  :.|.|.:|:|...| |.:|||      .|||:||:
plant     7 DNEPSSPA--SPSSAGFNTDQLPISTSQ--NSENFSDEEEAAVDTQVIRDEPDEAEDEEEEEGED 67

  Fly    59 LFGDNMENDYRPMPELDHYDPALLDDE-DDFSEMSQG--DRFAAESEM-RRRDRAAG------IH 113
            ||.|...||||.|.|.|.|:...:||. ||..::.|.  ||.||:::: .|.:|.|.      :|
plant    68 LFNDTFMNDYRKMDENDQYESNGIDDSVDDERDLGQAMLDRRAADADLDARENRLANRKLPHLLH 132

  Fly   114 RDDRDLGFGQSDDEDDVGPRAKRRA--------------GEKAAVGEVE--DTEMVESIENLEDT 162
                      .:|.||...|..:|:              |...:...|.  |..|.:..::.:|.
plant   133 ----------DNDSDDWNYRPSKRSRTTVPPRGNGGDPDGNPPSSPGVSQPDISMTDQTDDYQDE 187

  Fly   163 KGH-------------STKEWVSMLGPRTEIANRFQSFLRTFV---DERGAYTYRDRIRRMCEQN 211
            ..:             :.:|||.....|..||.:|:.||.|:|   :|.|...|...|..|...|
plant   188 DDNDDEAEFEMYRIQGTLREWVMRDEVRRFIAKKFKDFLLTYVKPKNENGDIEYVRLINEMVSAN 252

  Fly   212 MSSFVVSYTDLANKEHVLAYFLPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHVRISELPLI 276
            ..|..:.|.:..:....:|.:|.:||..:||:.::|::.::..:.|.|:.:.|:|:||::.||:.
plant   253 KCSLEIDYKEFIHVHPNIAIWLADAPQPVLEVMEEVSEKVIFDLHPNYKNIHTKIYVRVTNLPVN 317

  Fly   277 EELRTFRKLHLNQLVRTLGVVTATTGVLPQLSVIKYDCVKCGYVLGPFVQSQNTEIKPGSCPECQ 341
            :::|..|::|||.::|..||||..:||.|||..:||||.|||.|||||.|:..:|:|.|||.|||
plant   318 DQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAVLGPFFQNSYSEVKVGSCSECQ 382

  Fly   342 STGPFSINMEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNN 406
            |.|||::|:|||:||||||:|:|||||.:||||:||.|:||||.||.|..:||:|:|||||||||
plant   383 SKGPFTVNVEQTIYRNYQKLTIQESPGTVPAGRLPRHKEVILLNDLIDCARPGEEIEVTGIYTNN 447

  Fly   407 YDGSLNTDQGFPVFATVIIANHVVVKDSKQVVQSLTDEDIATIQKLSKDPRIVERVVASMAPSIY 471
            :|.||||..||||||||:.||:|..|........||.||...|::||||||||||::.|:|||||
plant   448 FDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKTQIEELSKDPRIVERIIKSIAPSIY 512

  Fly   472 GHDYIKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGA 536
            ||:.||.|||||:|||:.||...||::|||||:|:.|||||||||||||.||...|||:|||:||
plant   513 GHEDIKTALALAMFGGQEKNIKGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGA 577

  Fly   537 SAVGLTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 601
            |||||||.|.::||:||||||.|||||||:|:||||||||||||||.||||||||||||||||||
plant   578 SAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGI 642

  Fly   602 VTSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVH 666
            ||||||||:|||||||:|||||.|.:|::||.|::|||||||:||||||..||:.|:.||:|||:
plant   643 VTSLQARCSVIAAANPVGGRYDSSKSFAQNVELTDPILSRFDILCVVKDVVDPVTDEMLAEFVVN 707

  Fly   667 SHMKHHPS----EEEQPE--------LEEPQLKTVDEIPQDLLRQYIVYAKENIRPKLTNIDEDK 719
            ||.|..|.    |:..||        ..:|::     :||:||::|:.|:|..:.|||..:|..|
plant   708 SHFKSQPKGGKMEDSDPEDGIQGSSGSTDPEV-----LPQNLLKKYLTYSKLYVFPKLGELDAKK 767

  Fly   720 IAKMYAQLRQESFATGSLPITVRHIESVIRMSEAHARMHLRENVMEADVSMAIRMMLESFIEAQK 784
            :..:||.||:||.....:.|..||:||:|||||||||||||:.|.|.||:||||::|:|||..||
plant   768 LETVYANLRRESMNGQGVSIATRHLESMIRMSEAHARMHLRQYVTEEDVNMAIRVLLDSFISTQK 832

  Fly   785 FSVMKKMRSTFQKYLSFQKDHSELLFFILRQLTLDQLAYIRCKDG--PGATHVEIMERDLIERAK 847
            |.|.:.:|.:|::|::::||.:.||..:|::|..:.|.:.....|  .|...:|:...:|..:||
plant   833 FGVQRTLRESFKRYITYKKDFNSLLLVLLKELVKNALKFEEIISGSNSGLPTIEVKIEELQTKAK 897

  Fly   848 QLDIVNLKPFYESDLFRTNGFSYD--------PKRRI 876
            :.||.:|:||:.|..|....|..|        |||.|
plant   898 EYDIADLRPFFSSTDFSKAHFELDHGRGMIKCPKRLI 934

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227 34/145 (23%)
MCM_N 184..270 CDD:379644 25/88 (28%)
MCM 276..780 CDD:214631 321/515 (62%)
MCM2NP_175112.2 MCM2_N 67..>138 CDD:372227 25/80 (31%)
MCM_N 222..313 CDD:379644 26/90 (29%)
MCM 320..828 CDD:214631 321/512 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 342 1.000 Domainoid score I239
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3325
Inparanoid 1 1.050 808 1.000 Inparanoid score I87
OMA 1 1.010 - - QHG54431
OrthoDB 1 1.010 - - D266497at2759
OrthoFinder 1 1.000 - - FOG0004149
OrthoInspector 1 1.000 - - oto3465
orthoMCL 1 0.900 - - OOG6_101336
Panther 1 1.100 - - LDO PTHR11630
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3415
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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