DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and MCM3

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_199440.1 Gene:MCM3 / 834670 AraportID:AT5G46280 Length:776 Species:Arabidopsis thaliana


Alignment Length:653 Identity:220/653 - (33%)
Similarity:339/653 - (51%) Gaps:108/653 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 FVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEIFDKVAKDMVLSI 255
            |:|.    .|.:.|:.:..|.....:::.:|:.:....:|..:.:.|.:.::.|...|.:...:|
plant    18 FLDS----MYMEEIKALVHQKRHRLIINISDIHHHFREVASRILKNPNEYMQSFCDAATEATRAI 78

  Fly   256 FPTYERVTTEIHVRISELPL-------IEELRTFRKLHLNQLVRTLGVVTATTGVLPQLSVIKYD 313
            .|.|        ::..||.|       :..:.|.|:|    |...:|.:....|::.:.|:::..
plant    79 DPKY--------LKEGELV
LVGFEGYFVSRVVTPREL----LSDFIGSMVCVEGIVTKCSLVRPK 131

  Fly   314 CVKCGYVLGPFVQSQNTEIKPGSCPECQSTGPFS----------------------------INM 350
            .||                   |...|.|||.|:                            :..
plant   132 VVK-------------------SVHFCPSTGEFTNRDYRDITSHAGLPTGSVYPTRDDKGNLLVT 177

  Fly   351 EQTL--YRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIY---TNNYDGS 410
            |..|  |:::|.:::||.|.....|::|||.|||...||.|.|||||.:.|.|||   .....||
plant   178 EYGLCKYKDHQTLSIQEVPENAAPGQLPRSVDVIAEDDLVDSCKPGDRVSVFGIYKALPGKSKGS 242

  Fly   411 LNTDQGFPVFATVIIANHVVVKDSKQVVQSLTDEDIATIQKLSKDPRIVERVVASMAPSIYGHDY 475
            :|     .||.|::|||::.:.:.:......|.:|:..|:.:::.....:.:..|:|||||||.:
plant   243 VN-----GVFRTILIANNIALLNKEANAPIYTKQDLDNIKNIARRDDAFDLLARSLAPSIYGHAW 302

  Fly   476 IKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGASAVG 540
            ||:|:.|.:.||..||......:|||||:::.|||..||||.|:....:||.|:.|||:|:|.||
plant   303 IKKAVVLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVG 367

  Fly   541 LTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSL 605
            |||.|..:..:.|..|||||:||||:|:..||||||||||||.:|||.||||:::|:||||..||
plant   368 LTAAVTSDQETGERRLEAGAMVLADKGIVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASL 432

  Fly   606 QARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHSHMK 670
            .|||:|:||||||.|.||.|:|.::|:.|.:.:|||||:|.:|.|:.|...|..:::.|:..|..
plant   433 NARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDAGIDSMISEHVLRMHRY 497

  Fly   671 HHPSEEEQPELEEPQLK------------------------TVDE-IPQDLLRQYIVYAKENIRP 710
            .:...|..|:...|..:                        |.|: :....|::||.|||..|.|
plant   498 KNDRGEAGPDGSLPYAREDNAESEMFVKYNQTLHGKKKRGQTHDKTLTIKFLKKYIHYAKHRITP 562

  Fly   711 KLTNIDEDKIAKMYAQLRQESFAT---GSLPITVRHIESVIRMSEAHARMHLRENVMEADVSMAI 772
            |||:...::||:.||.||.....|   |:||||.|.:|::||::.|||:|.|...|.:||...|:
plant   563 KLTDEASERIAEAYADLRNAGSDTKTGGTLPITARTLETIIRLATAHAKMKLSSEVTKADAEAAL 627

  Fly   773 RMM 775
            ::|
plant   628 KLM 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227
MCM_N 184..270 CDD:379644 13/78 (17%)
MCM 276..780 CDD:214631 204/561 (36%)
MCM3NP_199440.1 MCM_N 12..89 CDD:405270 14/82 (17%)
MCM 100..634 CDD:214631 204/559 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266497at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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