DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm2 and PRL

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_001190655.1 Gene:PRL / 828153 AraportID:AT4G02060 Length:716 Species:Arabidopsis thaliana


Alignment Length:704 Identity:241/704 - (34%)
Similarity:355/704 - (50%) Gaps:110/704 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 QSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYF---LPEAPFQMLEIFDK 246
            :.||..|.|..|...|.:.::.:..:.:.:..|...||.|.:.....|   |.|...:.:.||..
plant    14 KGFLENFADANGRSKYMEILQEVSNRKIRAIQVDLDDLFNYKDESEEFLGRLTENTRRYVSIFSA 78

  Fly   247 VAKDMV---LSIFP---------------TYERVTTEIHVRI-SELPLIEE-------------L 279
            ...:::   ...||               |.....::.|.:| ||:....|             :
plant    79 AVDELLPEPTEAFPDDDHDILMTQRADDGTDNPDVSDPHQQIPSEIKRYYEVYFKAPSKGRPSTI 143

  Fly   280 RTFRKLHLNQLVRTLGVVTATTGVLPQLSVIKYDCVKCGYVLGPFVQSQNTEIKPGSCP--ECQ- 341
            |..:..|:.||||..|:||..:.|.|.::|..|.|..||:.:...|.|: ..:....||  .|: 
plant   144 REVKASHIGQLVRISGIVTRCSDVKPLMAVAVYTCEDCGHEIYQEVTSR-VFMPLFKCPSSRCRL 207

  Fly   342 --STGPFSINMEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGI-- 402
              ..|...:.:..:.:..:|:..:||....:|.|.||||..|.|..:|..:..|||.:|.:||  
plant   208 NSKAGNPILQLRASKFLKFQEAKMQELAEHVPKGHIPRSMTVHLRGELTRKVSPGDVVEFSGIFL 272

  Fly   403 ---YTNNYDGSLNTDQGFPVFATVIIAN---------HVVVKDSKQVVQSLTDEDIATIQKLSKD 455
               ||           ||......::|:         |...|..:...|...:|.||   :|::|
plant   273 PIPYT-----------GFKALRAGLVADTYLEATSVTHFKKKYEEYEFQKDEEEQIA---RLAED 323

  Fly   456 PRIVERVVASMAPSIYGHDYIKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKY 520
            ..|..::..|:||.||||:.||:||.|.|.|...:...:..|:|||:::.:.||||.||||.||:
plant   324 GDIYNKLSRSLAPEIYGHEDIKKALLLLLVGAPHRQLKDGMKIRGDVHICLMGDPGVAKSQLLKH 388

  Fly   521 TEKVAPRAVFTTGQGASAVGLTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSI 585
            ...||||.|:|||:|:|.|||||.|.|:.|:.|..||.|||||||.|:|.|||||||::.|||:|
plant   389 IINVAPRGVYTTGKGSSGVGLTAAVMRDQVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAI 453

  Fly   586 HEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKD 650
            ||.||||::||:||||.|||.||..|:|||||..||||...|.:||:||...:|||||:|.::.|
plant   454 HEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILD 518

  Fly   651 EFDPMQDQQLAKFVVHSHMKHHPSEEEQPELE-EPQLKTVDEIPQDLLRQYIVYAKENIRPKLTN 714
            ..|...|.:|||.|:|.|     ..||.|.|. ||       :..::||.||..|: .:.|.:..
plant   519 RADMDSDLELAKHVLHVH-----QTEESPALGFEP-------LEPNILRAYISAAR-RLSPYVPA 570

  Fly   715 IDEDKIAKMYAQLRQESFATGSLP---ITVRHIESVIRMSEAHARMHLRENVMEADVSMAIRMML 776
            ..|:.||..|:.:|||. |..:.|   .|||.:.|::|:|.|.||:...|:|.::||..|:|:|.
plant   571 ELEEYIATAYSSIRQEE-AKSNTPHSYTTVRTLLSILRISAALARLRFSESVAQSDVDEALRLMQ 634

  Fly   777 ESFI-----EAQK---------FSVM-------KKMRSTFQKYLSF--QKDHSE 807
            .|.|     :.||         :|::       ||...::...|::  :|.:||
plant   635 MSKISLYADDRQKAGLDAISDTYSIIRDEAARSKKTHVSYANALNWISRKGYSE 688

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227
MCM_N 184..270 CDD:379644 19/105 (18%)
MCM 276..780 CDD:214631 209/539 (39%)
PRLNP_001190655.1 MCM_N 16..98 CDD:405270 17/81 (21%)
MCM 139..638 CDD:214631 208/527 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D266497at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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