DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and mcm6

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_001016221.1 Gene:mcm6 / 548975 XenbaseID:XB-GENE-5870537 Length:821 Species:Xenopus tropicalis


Alignment Length:676 Identity:217/676 - (32%)
Similarity:353/676 - (52%) Gaps:86/676 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 DTKGHSTKEWVSMLGPRTEIANRFQSFLRTFVDE----RGAYTYRDRIRRMCEQNMSSFVVSYTD 221
            ||.|...|:         |::::.|.....|::|    .|:..|......:.....::.||::||
 Frog    13 DTAGQLFKD---------ELSDKCQKLFLEFLEECKGKDGSNLYVSAAEELVRPERNTLVVNFTD 68

  Fly   222 LANKEHVLAYFLPEAPFQMLEIFDKVAKDMV--LSIFPTYERVTTEIHVRISELPLIEELRTFRK 284
            :......||..:.|..:::.....:..:...  :...|    ...|.:|..|:.|..:::|....
 Frog    69 IEYYNQQLATTIQEEYYRVYPHLCRAVRSFARQMGNIP----ANKEFYVAFSDFPARQKIRELSS 129

  Fly   285 LHLNQLVRTLGVVTATTGVLPQLSVIKYDCVKCGYVLGPFVQSQNTEIKPGSC--PECQSTGPFS 347
            ..:..|:|..|.|..|..|.|:|....:.|:.|..|:.. |:.|....:|..|  |.|.:...|:
 Frog   130 AKIGTLLRISGQVVRTHPVHPELVSGTFLCMDCQSVVKD-VEQQFRYTQPTICKNPVCANRRRFT 193

  Fly   348 INMEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNNYD---- 408
            ::..::.:.::||:.:||:...:|.|.||||.::||.|:..:....||..:.||......|    
 Frog   194 LDTNKSRFVDFQKVRIQETQAELPRGAIPRSVEIILRAEAVETAMAGDRCDFTGTLIVVPDISAL 258

  Fly   409 --GSLNTDQGFPV-----------------------FATVIIANHV----------VVKDSKQVV 438
              |....:.|..|                       :....:|.||          .:::..|..
 Frog   259 AAGDARMETGAKVTGGEGFNSEGVQGLKALGVRDLSYRLAFLACHVGATNPRFGGKDLREEDQTA 323

  Fly   439 QSLTDEDIATIQ------KLSKDPRIVERVVASMAPSIYGHDYIKRALALALFGGESKNPGEKHK 497
            :|:.::  .|:|      ::|:|..:...:..|:.|:|:|:|.|||.:.|.||||..|...|...
 Frog   324 ESIKNQ--MTVQEWEKVFEMSQDKNLYHNLCTSLFPTIHGNDEIKRGVLLMLFGGVPKTTMEGTS 386

  Fly   498 VRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGASAVGLTAYVRRNPVSREWTLEAGALV 562
            :|||||:.|.|||.|:||||||:.|:.:||||:|:|:.:||.||||.|.::..|.|:.:|||||:
 Frog   387 LRGDINVCIVGDPSTSKSQFLKHVEEFSPRAVYTSGKASSAAGLTAAVVKDEESHEFVIEAGALM 451

  Fly   563 LADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYDPSMT 627
            |||.|||.|||||||:.:|:.:||||||||:|||:|||:..:|.||.:::|||||:||||:.|.:
 Frog   452 LADNGVCCIDEFDKMDLKDQVAIHEAMEQQTISITKAGVKATLNARTSILAAANPVGGRYERSKS 516

  Fly   628 FSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHSHMKHHPSEEEQPELEEPQLKTVDEI 692
            ...|||||.||:||||:..::.||.:.:.|..:|:.:|..|.::..|.|....:|:         
 Frog   517 LKHNVNLSAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHARNEESIERVYSIED--------- 572

  Fly   693 PQDLLRQYIVYAKENIRPKLTNIDEDKIAKMYAQLRQ---ESFATGSLPITVRHIESVIRMSEAH 754
                :::|:::|:: .:||:|...|:.|.:.|.:|||   ...|..|..||||.:||:||:||:.
 Frog   573 ----IQRYLLFARQ-FQPKITKEAEEFIVEQYRRLRQRDGSGVAKSSWRITVRQLESLIRLSESM 632

  Fly   755 ARMHLRENVMEADVSMAIRMMLESFI 780
            ||||..:.|....|..|.|::.:|.|
 Frog   633 ARMHCSDEVQPKHVKEAFRLLSKSII 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227 3/4 (75%)
MCM_N 184..270 CDD:379644 15/91 (16%)
MCM 276..780 CDD:214631 194/553 (35%)
mcm6NP_001016221.1 MCM_N 31..117 CDD:379644 14/89 (16%)
MCM 123..658 CDD:214631 194/551 (35%)
Arginine finger 529..532 2/2 (100%)
MCM6_C 710..819 CDD:375690
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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