DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm2 and mcm3

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_997732.2 Gene:mcm3 / 192323 ZFINID:ZDB-GENE-020419-4 Length:807 Species:Danio rerio


Alignment Length:685 Identity:227/685 - (33%)
Similarity:362/685 - (52%) Gaps:70/685 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 EIANRFQSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEI 243
            |:....:.:|....|::....|:.::|:|..:|.|..:|:..||..:....|..|....|:.|..
Zfish    10 EMREAQRDYLDFLDDDQDQGIYQSKVRQMISENKSRLIVNLNDLRRRNEKRAAKLLNNAFEELLA 74

  Fly   244 FDKVAKDMVLSIFPTYERVTTEIHVRISELPLIEELRTFRKLHLNQLV---RTLGVVTATTGVLP 305
            |.:..||:|.||..||.:...|..:.:.        .:|...|::...   |.||.:....|::.
Zfish    75 FQRALKDLVASIDATYAKQCEEFFIGLE--------GSFGSKHVSPRTLTSRLLGSMVCLEGIVT 131

  Fly   306 QLSVIKYDCVKCGY---VLGPFVQSQNTEIK-----PGSC---PECQSTGPFSINMEQTLYRNYQ 359
            :.|:::...|:..:   .....::.:.|::.     |.|.   .:.:...|.......::|:::|
Zfish   132 KCSLVRPKVVRSVHYCPATKKTMERKYTDLTSLDAFPSSAIYPTKDEENNPLETEFGLSVYKDHQ 196

  Fly   360 KITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNNYDGSLNTDQGFP--VFAT 422
            .||:||.|.:.|||::|||.|:||..||.|..||||..:|.|.| ....|...   ||.  .|.|
Zfish   197 TITIQEMPEKAPAGQLPRSVDIILDNDLVDAVKPGDRTQVIGTY-RCLPGKKG---GFTSGTFRT 257

  Fly   423 VIIANHVVVKDSKQVVQSLTDEDIATIQKL--SKDPRIVERVVASMAPSIYGHDYIKRALALALF 485
            ::||.| |.:.||::....:.:|:|.|:..  |:...:.:::..|:||||:||:|||:|:...|.
Zfish   258 IMIACH-VKQMSKEISHYFSADDVAKIKSFCRSRSKNVFDQLARSLAPSIHGHEYIKKAILCMLL 321

  Fly   486 GGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGASAVGLTAYVRRNPV 550
            ||..|......::|||||:|:.|||..||||.|:|....||||:.|||:|:|.|||||.|..:..
Zfish   322 GGVEKVLENGSRIRGDINVLLIGDPSVAKSQLLRYVLHTAPRAIPTTGRGSSGVGLTAAVTTDQE 386

  Fly   551 SREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAA 615
            :.|..|||||:||.|:||..|||||||:|.|||:|||.|||..::|:||||...|.|||:|:|||
Zfish   387 TGERRLEAGAMVLGDRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAA 451

  Fly   616 NPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHSHMKHHPSEE---- 676
            ||:.||||...|..||:.|.:.:|||||:|.::.|:.||.||::::..|:..|....|.|:    
Zfish   452 NPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHRYRDPHEQDGTA 516

  Fly   677 ------------EQPEL---EEPQLKTVDE---------------IPQDLLRQYIVYAKENIRPK 711
                        |.|:.   ||.:|:..::               :.:..:|:||..||. |.|.
Zfish   517 LALGGTIDALATEDPDATQEEEEELQVYEKHNPLLHGSKKNKDRVVSKAFMRKYIHVAKA-ISPV 580

  Fly   712 LTNIDEDKIAKMYAQLR-QESFATG---SLPITVRHIESVIRMSEAHARMHLRENVMEADVSMAI 772
            ||....:.||:.|::|| ||...:.   :.|:|.|.:|::||:|.|||:..:.:.|...|..:|:
Zfish   581 LTQDAANHIAEEYSRLRNQEQLGSDIARTSPVTARTLETLIRLSTAHAKARMSKAVELVDTEVAV 645

  Fly   773 RMMLESFIEAQKFSVMKKMRSTFQKYLSFQKDHSE 807
            .::..::.:.......|:.|:..|...|..::..|
Zfish   646 ELVQFAYFKKVLEKERKRSRNGQQDAASEDEEEEE 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227
MCM_N 184..270 CDD:379644 23/85 (27%)
MCM 276..780 CDD:214631 198/559 (35%)
mcm3NP_997732.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.