DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and mcm-5

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_497858.1 Gene:mcm-5 / 175552 WormBaseID:WBGene00003157 Length:759 Species:Caenorhabditis elegans


Alignment Length:713 Identity:219/713 - (30%)
Similarity:362/713 - (50%) Gaps:96/713 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 EIANRFQSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEI 243
            ::..:|::|:|.|........|||:::|....:.....::...|.|.:..:...|.:.|.::|..
 Worm    34 QLITQFRNFIRDFSTGGFGMIYRDQLKRNYFSHEYRLEINLNHLKNFDEDIEMKLRKFPGKVLPA 98

  Fly   244 FDKVAK---DMVLSIFPTYERVTTEIHVRIS--ELPLIEELRTFRKLHLNQLVRTLGVVTATTGV 303
            .::.||   |.:.:..|..|....:|.|.::  |.|  ..||..:...::|:|:..|::.|...|
 Worm    99 LEEAAKIVADEITTPRPKGEEKLHDIQVTLTLDEYP--TSLRQVKSAQVSQVVKISGIIVAAAQV 161

  Fly   304 LPQLSVIKYDCVKCGYVLGPFVQSQNTEIKPG-------------------SCPECQSTGPFSIN 349
            ..:.:.:...|.:|.:.:      .:..||||                   .||    ..|:.:.
 Worm   162 RSKATKVTLQCRQCKHTI------PDVSIKPGLEGFALPRTCAAPQQGQMQRCP----IDPYIML 216

  Fly   350 MEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYT-------NNY 407
            .::....:||.:.|||:|..:|.|.:||...:.....|.|:..||:.:.:.|:|:       ...
 Worm   217 PDKCECVDYQTLKLQENPEDVPHGEMPRHLQLFTERYLTDKVVPGNRVTIVGVYSIKKLIQKKGG 281

  Fly   408 DGSLNTDQGFPVFATVIIANHVVVK-DSKQVVQSLTDEDIATIQKLSKDPRIVERVVASMAPSIY 471
            |.||   ||.......::..|:... ..:....:.|.|:....:.|::.....|.:..|:|||||
 Worm   282 DKSL---QGIRTPYLRVLGIHMETSGPGRTNFTTFTPEEERMFKTLAQRKDAYELIAKSIAPSIY 343

  Fly   472 GHDYIKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGA 536
            |...||:::|..||||..|...:....|||||:|:.|||||||||.||:.|:|:|..|:|:|:|:
 Worm   344 GSADIKKSIACLLFGGARKKLPDGITRRGDINVLLLGDPGTAKSQLLKFVEQVSPIGVYTSGKGS 408

  Fly   537 SAVGLTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGI 601
            ||.||||.|.|:|.||.:.:|.||:||||.||..|||||||.:.||.:||||||||:|||:||||
 Worm   409 SAAGLTASVIRDPQSRSFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGI 473

  Fly   602 VTSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVH 666
            .|:|.:||:|:||||.:.||:|.|.. .:|::....||||||::.:|||..|.::|..|||.|:.
 Worm   474 TTTLNSRCSVLAAANSVYGRWDESRG-DDNIDFMPTILSRFDMIYIVKDTHDVLKDATLAKHVIE 537

  Fly   667 SHMKHHPSEEEQPELEEPQLKTVDE------------IPQDLLRQYIVYAKENIRPKLTNIDEDK 719
            .|: :..:.:|:.....|:..|.|.            :..:.|::::.||:.|..|:||....:|
 Worm   538 VHV-NASAAKERDIAGVPKTATTDSDGVMTMFDTDGFLTIEFLKKFVTYARLNCGPRLTPQASEK 601

  Fly   720 IAKMYAQLRQ-----ESFATG------SLPITVRHIESVIRMSEAHARMHLRENVMEADVSMAIR 773
            :...|.::|.     ::|.:|      ::|||||.:|:::|::|:.|:|.|::...:..|..|:|
 Worm   602 LVNHYVKMRNPVVNADAFKSGKKAHNSAIPITVRQLEAIVRIAESIAKMELQQFATDKHVEEALR 666

  Fly   774 MMLESFIEA---------------------QKFSVMKKMRSTFQKYLSFQKDHSELLFFILRQ 815
            :...|.|||                     .:..|..|.|.....::|   :|..:..|:.||
 Worm   667 LFRVSTIEAAATGNLAGVEGFTSTADQEALNRIEVQMKKRFAIGTHVS---EHLIVQDFVARQ 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227
MCM_N 184..270 CDD:379644 20/88 (23%)
MCM 276..780 CDD:214631 186/553 (34%)
mcm-5NP_497858.1 MCM_N 38..153 CDD:291233 26/116 (22%)
MCM 134..673 CDD:214631 187/555 (34%)
AAA 375..516 CDD:99707 84/141 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1241
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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