DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and mcm3

DIOPT Version :9

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:XP_031759909.1 Gene:mcm3 / 100158601 XenbaseID:XB-GENE-5857845 Length:818 Species:Xenopus tropicalis


Alignment Length:701 Identity:232/701 - (33%)
Similarity:357/701 - (50%) Gaps:96/701 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 EIANRFQSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHV-----------LAYF 232
            |:....:.:|....|::....|..::|.|...|....:::..|:..|...           |.:.
 Frog    11 ELREAQREYLDFLDDDQDQGLYHGKVRDMIGSNEHRLIINLNDVRRKNEKRANLTNRRYWRLIFR 75

  Fly   233 LPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHV---------RISELPLIEELRTFRKLHLN 288
            |....|.....|.:..||:|.||..||.:...|..|         .:|.       ||.....|.
 Frog    76 LLNNAFGETIAFQRALKDLVASIDATYAKQFEEFSVGFEGSFGSKHVSP-------RTLTASLLG 133

  Fly   289 QLVRTLGVVTATTGVLPQLSVIKYDCVKCGYVL-GPFVQSQNTEIKPGSC---PECQSTGPFSIN 349
            .||...|:||..:.|.|::....:.|......| ..:....:.|..|.|.   .:.:...|....
 Frog   134 SLVCVEGIVTKCSLVRPKVLRSVHYCPATKKTLERKYTDLTSLEAFPSSSIYPTKDEENNPLETE 198

  Fly   350 MEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNNYDGSLNTD 414
            ...:.||::|.:::||.|.:.|||::|||.|:|...||.|:|||||.:::.|||.     .|.:.
 Frog   199 YGLSTYRDHQTLSIQEMPEKAPAGQLPRSVDIIADDDLVDKCKPGDRVQIVGIYR-----CLPSK 258

  Fly   415 QG---FPVFATVIIANHVVVKDSKQVVQSLTDEDIATIQKL----SKDPRIVERVVASMAPSIYG 472
            ||   ...|.|:::||::.:. ||::..:.:.:|:|.|:|.    |||  |.|.:..|:||||:|
 Frog   259 QGGFTSGTFRTILLANNIKLM-SKEIAPTFSADDVAKIKKFCKAHSKD--IFEHLSKSLAPSIHG 320

  Fly   473 HDYIKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGAS 537
            |:|||:|:...|.||..|......::|||||:|:.|||..||||.|:|....||||:.|||:|:|
 Frog   321 HEYIKKAILCMLLGGNEKVLDNGTRIRGDINVLLIGDPSVAKSQLLRYVLYTAPRAIPTTGRGSS 385

  Fly   538 AVGLTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIV 602
            .|||||.|..:..:.|..|||||:||||:||..|||||||:|.|||:|||.|||..::|:||||.
 Frog   386 GVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIQ 450

  Fly   603 TSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHS 667
            ..|.|||:|:|||||:.||||...|..||:.|.:.:|||||:|.:|.|:.|...|:::|..|:..
 Frog   451 ARLNARCSVLAAANPVYGRYDQYRTPMENIGLQDSLLSRFDLLFIVLDKMDAENDREIADHVLRM 515

  Fly   668 HMKHHPSEEEQPEL-----------EEPQLKTVDE-----------------------IPQDLLR 698
            |....|.|::...|           ::|....|.:                       :....:|
 Frog   516 HRYRTPGEQDGYALPLGCSVEIFATDDPNASDVTDQELQIYEKHDNLLHGPRKNKSKIVSMQFIR 580

  Fly   699 QYIVYAKENIRPKLTNIDEDKIAKMYAQLRQ----ESFATGSLPITVRHIESVIRMSEAHARMHL 759
            :||..|| .|:|.||....|.|::.||::|.    .:.:..::|:|.|.:|::||::.|||::.:
 Frog   581 KYIHVAK-LIKPVLTPEAADYISQEYAKIRNHDQINNDSARTMPVTARALETMIRLATAHAKVRM 644

  Fly   760 RENVMEADVSMAIRMMLESFIEAQKFSVMKKMRSTFQKYLSFQKD-HSELL 809
            .:.:...|.        |:.:|..:|:..||:.:..:|  ...|| |.|:|
 Frog   645 SKTIERQDA--------ETALELVQFAYFKKVLAKDKK--KTDKDLHDEIL 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:372227
MCM_N 184..270 CDD:379644 21/105 (20%)
MCM 276..780 CDD:214631 199/552 (36%)
mcm3XP_031759909.1 MCM_N 32..113 CDD:405270 19/80 (24%)
MCM 120..665 CDD:214631 202/568 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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