DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and zmcm3

DIOPT Version :10

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:XP_031759909.1 Gene:zmcm3 / 100158601 XenbaseID:XB-GENE-971646 Length:818 Species:Xenopus tropicalis


Alignment Length:701 Identity:232/701 - (33%)
Similarity:357/701 - (50%) Gaps:96/701 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 EIANRFQSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHV-----------LAYF 232
            |:....:.:|....|::....|..::|.|...|....:::..|:..|...           |.:.
 Frog    11 ELREAQREYLDFLDDDQDQGLYHGKVRDMIGSNEHRLIINLNDVRRKNEKRANLTNRRYWRLIFR 75

  Fly   233 LPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHV---------RISELPLIEELRTFRKLHLN 288
            |....|.....|.:..||:|.||..||.:...|..|         .:|.       ||.....|.
 Frog    76 LLNNAFGETIAFQRALKDLVASIDATYAKQFEEFSVGFEGSFGSKHVSP-------RTLTASLLG 133

  Fly   289 QLVRTLGVVTATTGVLPQLSVIKYDCVKCGYVL-GPFVQSQNTEIKPGSC---PECQSTGPFSIN 349
            .||...|:||..:.|.|::....:.|......| ..:....:.|..|.|.   .:.:...|....
 Frog   134 SLVCVEGIVTKCSLVRPKVLRSVHYCPATKKTLERKYTDLTSLEAFPSSSIYPTKDEENNPLETE 198

  Fly   350 MEQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNNYDGSLNTD 414
            ...:.||::|.:::||.|.:.|||::|||.|:|...||.|:|||||.:::.|||.     .|.:.
 Frog   199 YGLSTYRDHQTLSIQEMPEKAPAGQLPRSVDIIADDDLVDKCKPGDRVQIVGIYR-----CLPSK 258

  Fly   415 QG---FPVFATVIIANHVVVKDSKQVVQSLTDEDIATIQKL----SKDPRIVERVVASMAPSIYG 472
            ||   ...|.|:::||::.:. ||::..:.:.:|:|.|:|.    |||  |.|.:..|:||||:|
 Frog   259 QGGFTSGTFRTILLANNIKLM-SKEIAPTFSADDVAKIKKFCKAHSKD--IFEHLSKSLAPSIHG 320

  Fly   473 HDYIKRALALALFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGAS 537
            |:|||:|:...|.||..|......::|||||:|:.|||..||||.|:|....||||:.|||:|:|
 Frog   321 HEYIKKAILCMLLGGNEKVLDNGTRIRGDINVLLIGDPSVAKSQLLRYVLYTAPRAIPTTGRGSS 385

  Fly   538 AVGLTAYVRRNPVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIV 602
            .|||||.|..:..:.|..|||||:||||:||..|||||||:|.|||:|||.|||..::|:||||.
 Frog   386 GVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIQ 450

  Fly   603 TSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHS 667
            ..|.|||:|:|||||:.||||...|..||:.|.:.:|||||:|.:|.|:.|...|:::|..|:..
 Frog   451 ARLNARCSVLAAANPVYGRYDQYRTPMENIGLQDSLLSRFDLLFIVLDKMDAENDREIADHVLRM 515

  Fly   668 HMKHHPSEEEQPEL-----------EEPQLKTVDE-----------------------IPQDLLR 698
            |....|.|::...|           ::|....|.:                       :....:|
 Frog   516 HRYRTPGEQDGYALPLGCSVEIFATDDPNASDVTDQELQIYEKHDNLLHGPRKNKSKIVSMQFIR 580

  Fly   699 QYIVYAKENIRPKLTNIDEDKIAKMYAQLRQ----ESFATGSLPITVRHIESVIRMSEAHARMHL 759
            :||..|| .|:|.||....|.|::.||::|.    .:.:..::|:|.|.:|::||::.|||::.:
 Frog   581 KYIHVAK-LIKPVLTPEAADYISQEYAKIRNHDQINNDSARTMPVTARALETMIRLATAHAKVRM 644

  Fly   760 RENVMEADVSMAIRMMLESFIEAQKFSVMKKMRSTFQKYLSFQKD-HSELL 809
            .:.:...|.        |:.:|..:|:..||:.:..:|  ...|| |.|:|
 Frog   645 SKTIERQDA--------ETALELVQFAYFKKVLAKDKK--KTDKDLHDEIL 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:403724
MCM_N 182..271 CDD:464206 21/108 (19%)
MCM 276..780 CDD:214631 199/552 (36%)
zmcm3XP_031759909.1 MCM_N <32..115 CDD:464206 19/82 (23%)
MCM 120..665 CDD:214631 202/568 (36%)
Blue background indicates that the domain is not in the aligned region.

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