DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm2 and mcm3l

DIOPT Version :10

Sequence 1:NP_477121.1 Gene:Mcm2 / 40973 FlyBaseID:FBgn0014861 Length:887 Species:Drosophila melanogaster
Sequence 2:NP_001164539.1 Gene:mcm3l / 100147915 ZFINID:ZDB-GENE-040121-2 Length:807 Species:Danio rerio


Alignment Length:677 Identity:235/677 - (34%)
Similarity:353/677 - (52%) Gaps:82/677 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 EIANRFQSFLRTFVDERGAYTYRDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEI 243
            |:....:.:|....|::....|.:::|.|........:|:..||..|....|..|.:..|..|..
Zfish     9 ELRESQREYLDFLDDDQDQGIYHEKVRSMVSDGQCRLIVNINDLRRKSEKRAKELLKNAFAELVA 73

  Fly   244 FDKVAKDMVLSIFPTYERVTTEIHV---------RISELPLIEELRTFRKLHLNQLVRTLGVVTA 299
            |.|..||:|.||..||.:...|.||         .:|.       ||.....|..||...|:||.
Zfish    74 FQKALKDLVASIDATYAKQFEEFHVGFEGSFGNKHVSP-------RTLSARFLGNLVCVEGIVTK 131

  Fly   300 TTGVLPQLSVIKYDCVKCGYVL-GPFVQSQNTEIKPGSC---PECQSTGPFSINMEQTLYRNYQK 360
            .:.|.|::....:.|......| ..:....:.:..|.|.   .:.:...|.........|:::|.
Zfish   132 CSLVRPKIMRSVHYCPATKKTLERKYTDLTSLDAFPSSAIYPTKDEENNPLETEFGLCCYKDHQT 196

  Fly   361 ITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVTGIYTNNYDGSLNTDQG---FPVFAT 422
            :|:||.|.:.|||::|||.|:|...||.|:.||||.:::.|:|.     .|...||   ...|.|
Zfish   197 LTIQEMPEKAPAGQLPRSVDIIANDDLVDRVKPGDRVQIVGVYR-----CLPAKQGGFTSGTFRT 256

  Fly   423 VIIANHVVVKDSKQVVQSLTDEDIATIQKL----SKDPRIVERVVASMAPSIYGHDYIKRALALA 483
            :::||:|.:. ||::|.:.:.:|:|.|:|.    |||  :.|::..|:||||:||:|||:|:...
Zfish   257 ILLANNVKLM-SKEIVPTFSGDDVAKIKKFCKAHSKD--VFEQLSRSLAPSIHGHEYIKKAILCL 318

  Fly   484 LFGGESKNPGEKHKVRGDINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGASAVGLTAYVRRN 548
            |.||...|.....::|||||:|:.|||..||||.|:|....||||:.|||:|:|.|||||.|..:
Zfish   319 LLGGNETNLENGTRIRGDINILLIGDPSVAKSQLLRYVLFTAPRAIPTTGRGSSGVGLTAAVTTD 383

  Fly   549 PVSREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIA 613
            ..:.|..|||||:||||:||..|||||||:|.|||:|||.|||..::||||||...|.|||:|:|
Zfish   384 QETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTISKAGIQARLNARCSVLA 448

  Fly   614 AANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKDEFDPMQDQQLAKFVVHSHMKHHPSEEEQ 678
            ||||:.||||...|..||:.|.:.:|||||:|.:|.|:.||..|:::::.|:..|....|.|.|.
Zfish   449 AANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIVLDQMDPDSDKEISEHVLRMHRYRAPGEAEG 513

  Fly   679 PEL-----------EEPQLKTVDE-----------------------IPQDLLRQYIVYAKENIR 709
            ..:           |:|.:....|                       :..:.:|:||..|| .::
Zfish   514 TAMPLGSTVDVFATEDPNITEASEQELQIYEKKDNVLHGHRKKREKIVTMEFIRKYIHVAK-LVK 577

  Fly   710 PKLTNIDEDKIAKMYAQLRQ----ESFATGSLPITVRHIESVIRMSEAHARMHLRENVMEADVSM 770
            |.||....|.||:.|::||.    .|.:..::|:|.|.:|::||:|.|||:..:.:.|..||...
Zfish   578 PVLTQEASDYIAEEYSRLRSHDQVNSDSARTMPVTARALETMIRLSTAHAKARMSKTVDLADAEA 642

  Fly   771 AIRMMLESFIEAQKFSVMKKMRSTFQK 797
            |:.:|        :|:..||:....:|
Zfish   643 ALELM--------QFAYFKKILEKVKK 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm2NP_477121.1 MCM2_N 59..166 CDD:403724
MCM_N 182..271 CDD:464206 25/97 (26%)
MCM 276..780 CDD:214631 204/552 (37%)
mcm3lNP_001164539.1 MCM_N 29..102 CDD:464206 23/72 (32%)
MCM 107..652 CDD:214631 206/568 (36%)
Blue background indicates that the domain is not in the aligned region.

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