DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment RpA-70 and AT1G52950

DIOPT Version :9

Sequence 1:	NP_524274.1	Gene:	RpA-70 / 40972	FlyBaseID:	FBgn0010173	Length:	603	Species:	Drosophila melanogaster
Sequence 2:	NP_175703.1	Gene:	AT1G52950 / 841728	AraportID:	AT1G52950	Length:	566	Species:	Arabidopsis thaliana

Alignment Length:	395	Identity:	86/395 - (21%)
Similarity:	161/395 - (40%)	Gaps:	58/395 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly   169 ISSLSPYQNKWVIKARVTSKSGIRTWSN-ARGEGKLFSMDLMDESG-EIRATAFKEQCDKFYDLI 231
            |.:|.|::..|.|:.::     :..|:: .:|.|..:.|.|.||.| :|:|...||...|....:
plant    10 IKNLKPFKTSWCIQVKI-----LHAWNHYTKGSGMSYEMMLADEDGNKIQAGIKKEHLLKLQRYV 69

  Fly   232 QVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDV-SG- 294
            ::.....|.:..:..|:..|.|..:.|.:.....|.........|    ||..:||..:|| ||
plant    70 KIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSSTRFSNSPTISD----EIWLDLVNFNDVLSGT 130

  Fly   295 MENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDA--------VN 351
            ::....|:.||....|||:|  :.....|..||.|..|.|..::.:..:|||..|        .:
plant   131 LDQNKLVNVIGQLVNVGEIQ--LLDVQGKPTKKIDFQLRDTDDNRLPCSLWGKFADQIHKVSKES 193

  Fly   352 FDGHVQPVILVKGTRINEFNGGKSLSLG-GGSIMKINPDIPEAHKLRGWFDNGGGDSVANMVSAR 415
            ..|.|  :.|::..::..:...:|:|.. ..|.:.|||.:.|..:.:....:.|..........|
plant   194 VGGIV--ICLIRWAKLGHYKEIRSISNAFDASEVFINPILTEVEEFKNLLPSDGLALTIMEPKPR 256

  Fly   416 TGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVKQE------------NAFYRACPQSD 468
                   .:.:.:::.|::..   ::....:.||...:.|.:            :.:|.|  ...
plant   257 -------FQPLRVREERSKQF---ERKTIAELKASFEVEKVKIICSILSIDLDYSWYYYA--HIK 309

  Fly   469 CNKKV------VDEGNDQ--FRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGH 525
            |||||      :..|..:  :||:||.....:.:.|..:::.|.|.|....:..|:...|.::|.
plant   310 CNKKVFKSKKTLSSGAKKIIYRCDKCATDVTSIEARYWLHLDIMDNTGESKLMLFDSFVEPIIGC 374

  Fly   526 TSQEV 530
            .:.|:
plant   375 PATEL 379

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RpA-70	NP_524274.1	rpa1	3..595	CDD:273177	86/395 (22%)
		Rep-A_N	6..107	CDD:281980
		RPA1_DBD_A	168..270	CDD:239920	24/102 (24%)
		RPA1_DBD_B	301..401	CDD:239921	27/108 (25%)
		Rep_fac-A_C	444..589	CDD:285809	23/107 (21%)
AT1G52950	NP_175703.1	RPA1_DBD_A_like	21..106	CDD:239926	20/89 (22%)
		RPA1_DBD_B_like	138..242	CDD:239927	26/107 (24%)
		RPA1_DBD_C	275..428	CDD:239922	23/107 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1599
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1189265at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.820