DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment RpA-70 and AT1G14800

DIOPT Version :9

Sequence 1:	NP_524274.1	Gene:	RpA-70 / 40972	FlyBaseID:	FBgn0010173	Length:	603	Species:	Drosophila melanogaster
Sequence 2:	NP_172933.1	Gene:	AT1G14800 / 838045	AraportID:	AT1G14800	Length:	384	Species:	Arabidopsis thaliana

Alignment Length:	215	Identity:	39/215 - (18%)
Similarity:	68/215 - (31%)	Gaps:	73/215 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly   191 IRTWS--NARGEGKLFSMDLM---DESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQ 250
            :|.|.  |.:.:|:...:.|:   ::...|.|.........|..:::...::.:|..::....|.
plant    35 LRFWDARNIKKDGQFMGIVLLLLDEKCSVIHAFIPAALASHFRQVLREGIIFNVSGFEVGRCTKL 99

  Fly   251 YSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQS 315
            |...::.:.:.|...|.:                  :.:|||.        .||       |.:.
plant   100 YKITDHPFLLRFLPATTI------------------IEVSDVG--------PTI-------EREK 131

  Fly   316 FVAR---------TTNKEFKKRDITLVDMSN-------------------SAISLTLWGDDAVNF 352
            |:.|         .||.|...: ||.|..||                   ..:.|:||.|.|..|
plant   132 FMLRNFDNLQALANTNIELPGQ-ITFVQGSNLNDPTSTQRLVLRYRIDSSVIVYLSLWDDVAATF 195

  Fly   353 DGHVQPVILVKGTRINEFNG 372
            ..|      :...|..|..|
plant   196 RAH------LSSGRAEELEG 209

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RpA-70	NP_524274.1	rpa1	3..595	CDD:273177	39/215 (18%)
		Rep-A_N	6..107	CDD:281980
		RPA1_DBD_A	168..270	CDD:239920	13/83 (16%)
		RPA1_DBD_B	301..401	CDD:239921	23/100 (23%)
		Rep_fac-A_C	444..589	CDD:285809
AT1G14800	NP_172933.1	RPA1_DBD_A_like	30..117	CDD:239926	13/81 (16%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1189265at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010