DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpA-70 and AT5G28885

DIOPT Version :9

Sequence 1:NP_524274.1 Gene:RpA-70 / 40972 FlyBaseID:FBgn0010173 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_680253.1 Gene:AT5G28885 / 833008 AraportID:AT5G28885 Length:184 Species:Arabidopsis thaliana


Alignment Length:73 Identity:18/73 - (24%)
Similarity:33/73 - (45%) Gaps:4/73 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 KYNLVPISDVSGMEN--KAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLW 345
            ::|..|.|.:....:  :|.:|..|  :.:|..:..|...::...|..||.|.|:|.:....||.
plant    75 RFNFSPFSKILTQSDVGEAFIDVSG--EIIGMSEIIVKDCSDNMSKLLDIQLRDLSQTIPECTLR 137

  Fly   346 GDDAVNFD 353
            ..|:.:.|
plant   138 MPDSESND 145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpA-70NP_524274.1 rpa1 3..595 CDD:273177 18/73 (25%)
Rep-A_N 6..107 CDD:281980
RPA1_DBD_A 168..270 CDD:239920
RPA1_DBD_B 301..401 CDD:239921 14/53 (26%)
Rep_fac-A_C 444..589 CDD:285809
AT5G28885NP_680253.1 DUF223 <1..53 CDD:145722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1189265at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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