DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpA-70 and Rpa1

DIOPT Version :9

Sequence 1:NP_524274.1 Gene:RpA-70 / 40972 FlyBaseID:FBgn0010173 Length:603 Species:Drosophila melanogaster
Sequence 2:XP_006534114.1 Gene:Rpa1 / 68275 MGIID:1915525 Length:652 Species:Mus musculus


Alignment Length:660 Identity:266/660 - (40%)
Similarity:387/660 - (58%) Gaps:76/660 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VLASLSTGVIARIMHGEVVD-APVLQILAIKKINSAADSERYRILISDGKYFNSYAMLASQLNVM 65
            ::..||.|.|..::..|... .|:||::.|:.|::...|.|||:|:|||....|..|||:|||.:
Mouse     1 MVGHLSEGAIEVMIQQENTSIKPILQVINIRPISTGNRSPRYRLLMSDGLNTLSSFMLATQLNTL 65

  Fly    66 QHNGELEEFTIVQLDKYVTSLVGKDGAGK---------------------------RVLIISELT 103
            ...|:|....:.|:.|::.:.: |||..:                           :|:::.:|.
Mouse    66 VEGGQLASNCVCQVHKFIVNTL-KDGRMQPKPHGNPYGEQSVLRKLSQCVLYYTRVKVVVLMDLE 129

  Fly   104 VVNPGAEVKSKIGEPVTY----------ENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMN 158
            |:....:|..|||.||.|          :...:|...|.|| ::.:.|.:|.:|   .|.::.|.
Mouse   130 VMKSAEDVGLKIGNPVPYNEGYGQQQQQQQQQQQQAVPSPA-SAATPPASKPQP---QNGSLGMG 190

  Fly   159 SSI--------------------NSGMTH----PISSLSPYQNKWVIKARVTSKSGIRTWSNARG 199
            |:.                    .||.|.    ||:||:|||:||.|.||||:||.||||||:||
Mouse   191 STAAKAYGASKPFGKPAGTGLLQPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRG 255

  Fly   200 EGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSG 264
            ||||||::|:|||||||||||.||.|||:.||:|:.|||.||..||.||||:|::.|.|||||:.
Mouse   256 EGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGALKIANKQFSAVKNDYEMTFNN 320

  Fly   265 ETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRD 329
            ||.|..||  |...:|.::::...|.|:......|.||.|||||...:......::.|:|..||:
Mouse   321 ETSVLPCE--DGHHLPTVQFDFTGIGDLESKAKDALVDIIGICKSYEDSIKITVKSNNREVAKRN 383

  Fly   330 ITLVDMSNSAISLTLWGDDAVNFDGHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAH 394
            |.|:|||...::.||||:||..|||..|||:.:||.|:::| ||:|||:...|.:.:|||||||:
Mouse   384 IYLMDMSGKVVTTTLWGEDADKFDGSRQPVMAIKGARVSDF-GGRSLSVLSSSTVIVNPDIPEAY 447

  Fly   395 KLRGWFDNGG----GDSVANMVSARTGGGSFSTEWMTLKDARARNLGSGDKPDYFQCKAVVHIVK 455
            |||||||:.|    |.|:::..|...|||  :|.|.||.:|::.|||.|||.|||...|.|..::
Mouse   448 KLRGWFDSEGQALDGVSISDHRSGGAGGG--NTNWKTLHEAKSENLGQGDKADYFSTVAAVVFLR 510

  Fly   456 QENAFYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGE 520
            :||..|:|||..||||||:|:.|..:|||||:..|||||||::::.:|.|:..|:||:.|.|..|
Mouse   511 KENCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAE 575

  Fly   521 QLLGHTSQEVGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEY 585
            .:||..:..:||..|.:....|::|...||.|..|::|.|.|.|.|.:|.|.||..|.|::.::|
Mouse   576 AILGQNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDY 640

  Fly   586 NKHLLKELQE 595
            .:.|:..:::
Mouse   641 GRRLIANIRK 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpA-70NP_524274.1 rpa1 3..595 CDD:273177 266/657 (40%)
Rep-A_N 6..107 CDD:281980 35/128 (27%)
RPA1_DBD_A 168..270 CDD:239920 71/101 (70%)
RPA1_DBD_B 301..401 CDD:239921 50/99 (51%)
Rep_fac-A_C 444..589 CDD:285809 61/144 (42%)
Rpa1XP_006534114.1 rpa1 2..650 CDD:273177 266/657 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845926
Domainoid 1 1.000 142 1.000 Domainoid score I4691
eggNOG 1 0.900 - - E1_COG1599
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2208
Inparanoid 1 1.050 485 1.000 Inparanoid score I1422
Isobase 1 0.950 - 0 Normalized mean entropy S1600
OMA 1 1.010 - - QHG54397
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002228
OrthoInspector 1 1.000 - - oto94924
orthoMCL 1 0.900 - - OOG6_101316
Panther 1 1.100 - - LDO PTHR23273
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2748
SonicParanoid 1 1.000 - - X1901
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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