Protein Alignment RpA-70 and ssb1

DIOPT Version :9

• Sequence 1: NP_524274.1
• Gene: RpA-70 / 40972
• FlyBaseID: FBgn0010173
• Length: 603
• Species: Drosophila melanogaster
• Sequence 2: NP_595092.1
• Gene: ssb1 / 2541158
• PomBaseID: SPBC660.13c
• Length: 609
• Species: Schizosaccharomyces pombe
• Alignment Length: 625
• Identity: 215/625 - (34%)
• Similarity: 357/625 - (57%)
• Gaps: 59/625 - (9%)

  Fly     6 LSTGVIARIMHGEVVDA------PVLQILAIKKINSAADS---ERYRILISDGKYFNSYAMLASQ 61
            ||.|.: ||::  ..||      |:||:|.:|::||...|   :|||:::||...: :.:||::|
pombe     5 LSVGAL-RIIN--TSDASSFPPNPILQVLTVKELNSNPTSGAPKRYRVVLSDSINY-AQSMLSTQ 65

  Fly    62 LNVMQHNGELEEFTIVQLDKYVTSLVGKDGAGKRVLIISELTVVNPGAEVKSKIGEPVTYE---- 122
            ||.:....:|::...|||.::..:::.:    :::||:..|.|:.. ..|..|||.|...|
pombe    66 LNHLVAENKLQKGAFVQLTQFTVNVMKE----RKILIVLGLNVLTE-LGVMDKIGNPAGLETVDA 125

  Fly   123 -----NAAKQDLAPKPAVTSNSK---------------PIAKKEPSHNNNNNIVMNSSINSGMTH 167
                 |......||:..:::::.               |:.||..:.|:.:.|:          :
pombe   126 LRQQQNEQNNASAPRTGISTSTNSFYGNNAAATAPAPPPMMKKPAAPNSLSTII----------Y 180

  Fly   168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGEIRATAFKEQCDKFYDLIQ 232
            ||..||||||||.|:||||:||.::.|.|.||||||||::|:|||||||||.|.:|.|.|||::|
pombe   181 PIEGLSPYQNKWTIRARVTNKSEVKHWHNQRGEGKLFSVNLLDESGEIRATGFNDQVDAFYDILQ 245

  Fly   233 VDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMEN 297
            ..||||||:|::..|.|||:::.|.||:.|..:|.::..|  |...:|..|::.|.:.:|..:..
pombe   246 EGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIRKAE--DQTAVPVAKFSFVSLQEVGDVAK 308

  Fly   298 KAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNFDGHVQPVILV 362
            .|.:|.||:.:.||.:|...:|.|::.|.|||||:||.:...:.:||||..|:.|....:.::..
pombe   309 DAVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKTAIEFSVSEESILAF 373

  Fly   363 KGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFD-NGGGDSVA--NMVSARTGGGSFSTE 424
            ||.::|:|. |:|||:...|.|.::|||.|:|.|:||:| .|.|...|  :::|:.......|.|
pombe   374 KGVKVNDFQ-GRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLSTTGRSAE 437

  Fly   425 WMTLKDARARNLGSGDKPDYFQCKAVVHIVKQENAFYRACPQSDCNKKVVDEGNDQFRCEKCNAL 489
            ...:.:.:|.:||..:.||||..|..:..::::|..|.|||.:||||||.|:|. .:||||||..
pombe   438 RKNIAEVQAEHLGMSETPDYFSLKGTIVYIRKKNVSYPACPAADCNKKVFDQGG-SWRCEKCNKE 501

  Fly   490 FPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALENDPAKAEQIFSALNFTSHI 554
            :...:||.:|.:::||.|...|::.|::||:.::..|:.|:.:..|||........:...:..:|
pombe   502 YDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYI 566

  Fly   555 FKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQ 594
            |:.|.|.:.:....|.:.||.|:..::.||.:|.|:..::
pombe   567 FQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIE 606

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpA-70	NP_524274.1	rpa1	3..595	CDD:273177	215/625 (34%)
		Rep-A_N	6..107	CDD:281980	33/109 (30%)
		RPA1_DBD_A	168..270	CDD:239920	60/101 (59%)
		RPA1_DBD_B	301..401	CDD:239921	40/99 (40%)
		Rep_fac-A_C	444..589	CDD:285809	48/144 (33%)
ssb1	NP_595092.1	rpa1	2..607	CDD:273177	215/625 (34%)
		RPA1N	8..106	CDD:239923	31/105 (30%)
		RPA1_DBD_A	181..281	CDD:239920	60/99 (61%)
		REPA_OB_2	300..397	CDD:293505	34/97 (35%)
		Rep_fac-A_C	457..601	CDD:285809	48/144 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	104	1.000	Domainoid score	I1738
eggNOG	1	0.900	-	-		E1_COG1599
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2208
Inparanoid	1	1.050	378	1.000	Inparanoid score	I420
OMA	1	1.010	-	-		QHG54397
OrthoFinder	1	1.000	-	-		FOG0002228
OrthoInspector	1	1.000	-	-		oto101948
orthoMCL	1	0.900	-	-		OOG6_101316
Panther	1	1.100	-	-	LDO	PTHR23273
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R2748
SonicParanoid	1	1.000	-	-		X1901
TreeFam	1	0.960	-	-
	14	13.860