DRSC/TRiP Functional Genomics Resources

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Protein Alignment RPA1 and R03H10.7

DIOPT Version :10

Sequence 1:NP_524274.1 Gene:RPA1 / 40972 FlyBaseID:FBgn0010173 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_494734.3 Gene:R03H10.7 / 187559 WormBaseID:WBGene00019859 Length:359 Species:Caenorhabditis elegans


Alignment Length:243 Identity:66/243 - (27%)
Similarity:115/243 - (47%) Gaps:24/243 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 PISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESGE-IRATAFKEQCDKFYDLI 231
            ||.:|....|.:.|..|||    :..........|.|:.::.|.:|: |..:|...:.|.||..:
 Worm   116 PIENLKESVNYFKIHGRVT----LMDTRPPHHYQKRFNFEITDFNGDTIACSASSPEADVFYQNL 176

  Fly   232 QVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDPIPEI----KYNL--VPIS 290
            ..:..||::...:|..::.|:.....|::..:..|::        :|.|.:    |:|:  |.:|
 Worm   177 VKEQSYYLAGGHIKKGHEIYNQTGIDYQIDLNNFTIM--------EPAPTLLTLPKFNIQRVFLS 233

  Fly   291 DVSGMENKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVNF--D 353
            ||:.:  |..:|.:...||..:::::.. |.||...||.|.::|.|.|.|..|.||.:||:.  :
 Worm   234 DVANV--KKPIDVLVCIKEFKDVENYTP-TENKPPHKRHIQVIDDSKSEIRATFWGYNAVDAIRE 295

  Fly   354 GHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFD 401
            ..:..|:..||....|.||...||:..|:.:.|.|::..|..|..|||
 Worm   296 EFLNKVVAFKGVIPTEGNGQLFLSITPGTRIVIQPEVDGAAYLEAWFD 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPA1NP_524274.1 rpa1 3..595 CDD:273177 66/243 (27%)
R03H10.7NP_494734.3 Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold. 7..101 CDD:471953
rpa1 <106..>355 CDD:273177 66/243 (27%)
Blue background indicates that the domain is not in the aligned region.

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