DRSC/TRiP Functional Genomics Resources

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Protein Alignment RPA1 and R03H10.6

DIOPT Version :10

Sequence 1:NP_524274.1 Gene:RPA1 / 40972 FlyBaseID:FBgn0010173 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_494733.2 Gene:R03H10.6 / 187558 WormBaseID:WBGene00019858 Length:324 Species:Caenorhabditis elegans


Alignment Length:350 Identity:81/350 - (23%)
Similarity:129/350 - (36%) Gaps:104/350 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 NGELEEFTIVQLDKYVTSL--VGKDGAG---KRVLIISELTVVNPGA------------------ 109
            ||...:.|    |.|..|:  |....||   ||.|.::||..|..|.                  
 Worm    32 NGVSFDLT----DTYGESIRCVAFGAAGEYCKRELKLNELCYVMDGKIQLKSDDYPSYTTHACEI 92

  Fly   110 ------EVKSKIGEPVTYENAAKQDLAPKPAVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMTHP 168
                  .||.:..:|.|.:|..    ||..|||                               |
 Worm    93 IIFNEHNVKIRQEDPATDQNVD----APPAAVT-------------------------------P 122

  Fly   169 ISSLSPYQNKWVIKARVTSKSGIRTWSNARGEGKLFSMDLMDESG-EIRATAFKEQCDKFYDLIQ 232
            |::|:...:.:.|..|||      ...:.|...|:||.::.|.:| .||..||.|...:.|..|.
 Worm   123 IANLNDSVDNFKIHGRVT------LMDDKRRPEKVFSFEITDVNGYTIRCVAFGELGVRLYGSIA 181

  Fly   233 VDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQLCEDTDDDP----------IPEIKYNLV 287
            .|..||::..::|..:..|:...:|:|:..            |:.|          :|::..|.|
 Worm   182 KDQSYYLTGGKVKNGHTLYNQTGHAFEIIL------------DEFPTIEPAPAVLTVPKLNLNRV 234

  Fly   288 PISDVSGME-NKAAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDDAVN 351
            .:.:|...: .:..:|.|...:|:.:.........||....|::.::|.||..|.|||||..|: 
 Worm   235 MLCNVQNEQYYRKPIDVIVAVEEINDFLDDYHPIENKPPVLRNMVVIDDSNFRIRLTLWGYRAM- 298

  Fly   352 FDGHVQ----PVILVKGTRINEFNG 372
             |..|:    .::..||....:|.|
 Worm   299 -DSGVEEFQNKIVAFKGIVPTQFEG 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPA1NP_524274.1 rpa1 3..595 CDD:273177 80/349 (23%)
R03H10.6NP_494733.2 Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold. 7..103 CDD:471953 18/74 (24%)
rpa1 <104..>322 CDD:273177 62/272 (23%)

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