DRSC/TRiP Functional Genomics Resources

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Protein Alignment RPA1 and sdz-24

DIOPT Version :10

Sequence 1:NP_524274.1 Gene:RPA1 / 40972 FlyBaseID:FBgn0010173 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_493781.1 Gene:sdz-24 / 173457 WormBaseID:WBGene00019495 Length:236 Species:Caenorhabditis elegans


Alignment Length:247 Identity:51/247 - (20%)
Similarity:92/247 - (37%) Gaps:62/247 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 ELEEFTIVQLDKYVTSLVGKDGAGKRVLIISEL-----TVVNPGAEVKS-----KIGEPVTYENA 124
            ::::|.|.....|...  .|:|.|...|:...|     .:|...|.||.     |:|:| .|...
 Worm    14 DIQKFRIYGRVTYFQE--NKNGNGIHFLLTDSLGCSIKCIVTVEAVVKHCKDQLKLGQP-CYVRG 75

  Fly   125 AKQDLAPK--PAVTSNSKPIAKKEPSHNNNNNIVMNSSINSGMTHPISSLSPYQNKWVIKARVTS 187
            .:.|...|  |..|.:...|      .|||...:..:::.:....||::|:  ..|.:.|..   
 Worm    76 GRVDYHDKRYPNRTGHDCVI------FNNNIAEIQITTVATNFVTPIATLN--APKIIYKVH--- 129

  Fly   188 KSGIRTWSNARGEGKLFSMDLMDESGE-IRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQY 251
              |:.|......:.::|...:.|:.|: :...||.|..|..|:.::....||:           |
 Worm   130 --GMITQRGKYSKKEVFCFVITDDKGDSVNVAAFCEFADWLYENLKEKQWYYL-----------Y 181

  Fly   252 SSLNNAYEMTFSGETVVQLCEDTDDDPIPEIKYNLVPISDVSGMENKAAVDT 303
            ..|            :.::|: .||...|         ::|..:.||..::|
 Worm   182 CGL------------IEKVCK-PDDQKEP---------NNVIILHNKCQIET 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RPA1NP_524274.1 rpa1 3..595 CDD:273177 51/247 (21%)
sdz-24NP_493781.1 Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold. 7..104 CDD:471953 24/98 (24%)
RPA2_OBF_family 127..>184 CDD:239601 14/72 (19%)

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