Protein Alignment CG18249 and caps

DIOPT Version :10

• Sequence 1: NP_001163549.1
• Gene: CG18249 / 40964
• FlyBaseID: FBgn0037553
• Length: 559
• Species: Drosophila melanogaster
• Sequence 2: NP_001303391.1
• Gene: caps / 39493
• FlyBaseID: FBgn0023095
• Length: 811
• Species: Drosophila melanogaster
• Alignment Length: 416
• Identity: 108/416 - (25%)
• Similarity: 174/416 - (41%)
• Gaps: 79/416 - (18%)

  Fly    33 ASCPDSFCSLSDRPVAYSATPALQLRELHLRNCSRQSITWLVLQLTPGLRTLVIRNCATYHISKE 97
            |:||:. |...|              :..:.||...::..|.:.|.|.::.|||:|.....|. .
  Fly    41 ANCPNG-CECDD--------------DTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTID-S 89

  Fly    98 SLRPVENLTSLQMQGTSLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQGLSKLRLLGLQGNA 162
            |::....||.|.:....:..:.::.|....:|:.|.|..|.|..|....|.|||.:.:|.|:||.
  Fly    90 SMQFYAQLTFLDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNL 154

  Fly   163 IAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQTLLLNGNPLRILMPDVLGSLPNLRL 227
            |||:...|..|:::|..|:|.:|.::.:.                        |..|..|.|||:
  Fly   155 IAELEYRTFSPMVKLAELNLGQNRISHID------------------------PHALDGLDNLRV 195

  Fly   228 LDLGHAAELEVMTLNLTNVQNLVLEGSSLSSLVINGGFIKLQAGNNELNHLQVG---NKSSVIEM 289
            |.|...        .||.|.. .|...:|.||.      :|..|.|....:..|   :...:..:
  Fly   196 LYLDDN--------TLTTVPG-ELTFQALHSLA------ELYLGTNSFMTIPGGAFQDLKGLTRL 245

  Fly   290 DLHGNLLNGNDTAALLRGMWNLQRLDLSKNRIEALP----QHGSGLDA--SGTQELLILPS---- 344
            ||.|..|: |.:...|:|:.:|:.||||.||:.|:|    |....|:.  .|..:..::.|
  Fly   246 DLRGAGLH-NISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDFEVISSGAFS 309

  Fly   345 ----LKFLNLANNQLVRLPPESPILS--SRLSYLDLSHNLMLT-LDVAILRSLSVLKGLYVEGNR 402
                |:.|.|...|.:| ..||...|  :.|.:|:||.|..|. |....|..|..|..:.::.|:
  Fly   310 GLRELRHLELTGAQRLR-RVESGAFSGNTNLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQ 373

  Fly   403 LNTINYQKLHEEHPDLSELGLHDNPW 428
            |::::...:  ...||..|.|.:||:
  Fly   374 LSSLDEGLV--PWADLQTLDLSENPF 397

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG18249	NP_001163549.1	leucine-rich repeat	57..80	CDD:275380	4/22 (18%)
		LRR	105..433	CDD:443914	92/344 (27%)
		leucine-rich repeat	105..128	CDD:275380	4/22 (18%)
		leucine-rich repeat	129..152	CDD:275380	9/22 (41%)
		leucine-rich repeat	153..176	CDD:275380	9/22 (41%)
		leucine-rich repeat	177..200	CDD:275380	4/22 (18%)
		leucine-rich repeat	201..224	CDD:275380	3/22 (14%)
		leucine-rich repeat	225..258	CDD:275380	9/32 (28%)
		leucine-rich repeat	259..310	CDD:275380	12/53 (23%)
		leucine-rich repeat	311..344	CDD:275380	12/38 (32%)
		leucine-rich repeat	345..368	CDD:275380	8/24 (33%)
		leucine-rich repeat	369..390	CDD:275380	8/21 (38%)
		leucine-rich repeat	393..417	CDD:275380	3/23 (13%)
caps	NP_001303391.1	leucine-rich repeat	75..96	CDD:275380	6/21 (29%)
		LRR_8	96..155	CDD:404697	18/58 (31%)
		leucine-rich repeat	97..120	CDD:275380	4/22 (18%)
		leucine-rich repeat	121..144	CDD:275380	9/22 (41%)
		LRR	135..>398	CDD:443914	82/306 (27%)
		leucine-rich repeat	145..168	CDD:275380	9/22 (41%)
		leucine-rich repeat	169..192	CDD:275380	7/46 (15%)
		leucine-rich repeat	193..217	CDD:275380	9/32 (28%)
		leucine-rich repeat	218..241	CDD:275380	5/28 (18%)
		leucine-rich repeat	242..265	CDD:275380	7/23 (30%)
		leucine-rich repeat	266..289	CDD:275380	10/22 (45%)
		leucine-rich repeat	290..313	CDD:275380	3/22 (14%)
		leucine-rich repeat	314..335	CDD:275380	7/21 (33%)
		leucine-rich repeat	339..363	CDD:275380	9/23 (39%)
		LRRCT	395..445	CDD:214507	2/3 (67%)