DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18249 and trn

DIOPT Version :10

Sequence 1:NP_001163549.1 Gene:CG18249 / 40964 FlyBaseID:FBgn0037553 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster


Alignment Length:462 Identity:116/462 - (25%)
Similarity:180/462 - (38%) Gaps:126/462 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ALAVYDASGRFNLSASCPDSFCSLSDRPVAYSATPALQLRELHLRNCSRQSITWLVLQLTPGLRT 83
            ::.|..|:|    .|:||.. |...|..:..              .|....:..|.:.|.|.::.
  Fly    18 SIGVEPAAG----LANCPPG-CQCDDNTLVV--------------QCGEGQLDVLPIALNPSIQR 63

  Fly    84 LVIRNCATYHISKESLRPVENLTSLQMQGTSLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQ 148
            |||::.....|. .|::....||.|.:....|..:..:.|....:|:.:.|:.|.|..:....|.
  Fly    64 LVIKSNKIKTID-SSIQFYAELTFLDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFI 127

  Fly   149 GLSKLRLLGLQGNAIAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQTLLLNGNPLRI 213
            |||.:.:|.|:||.|:|:...|..||:::..|:|..|.:..|....|....:|:.|.|:.|.| .
  Fly   128 GLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKAFDGLSQLRILYLDDNAL-T 191

  Fly   214 LMPD--VLGSLPNLRLLDLGHAAELEVMTL---------NLTNVQNLVLEGSSLSSLVINGGFIK 267
            .:||  :..::|:|..|.||      :.||         :|..:..|.|:|:||.::        
  Fly   192 TVPDPVIFQAMPSLAELFLG------MNTLQSIQADAFQDLKGLTRLELKGASLRNI-------- 242

  Fly   268 LQAGNNELNHLQVGNKSSVIEMDLHGNLLNGNDTAALLRGMWNLQRLDLSKNRIEALPQHGSGLD 332
                                   .|.:.|          |:..|:.||||.||::.:|..|    
  Fly   243 -----------------------SHDSFL----------GLQELRILDLSDNRLDRIPSVG---- 270

  Fly   333 ASGTQELLILPSLKFLNLANN--------------QLVRLPPESPILSSR-----------LSYL 372
                  |..|..|:.|:|..|              ||.||.....:...|           |.||
  Fly   271 ------LSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGNLEYL 329

  Fly   373 DLSHNLMLTLDV--AILRSLSVLKGLYVEGNRLNTINYQKLHE---EHPDLSELGLHDNPWSSGL 432
            :||.|.|| |:|  ..|..||.||.:.::.|.|.:     |.|   ...||..|.|.:||.|...
  Fly   330 NLSSNKML-LEVQEGALSGLSQLKHVVLKANALTS-----LAEGLFPWKDLQTLDLSENPLSCDC 388

  Fly   433 YRKMFLY 439
             |.|:|:
  Fly   389 -RVMWLH 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18249NP_001163549.1 leucine-rich repeat 57..80 CDD:275380 3/22 (14%)
LRR 105..433 CDD:443914 96/368 (26%)
leucine-rich repeat 105..128 CDD:275380 5/22 (23%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
leucine-rich repeat 153..176 CDD:275380 9/22 (41%)
leucine-rich repeat 177..200 CDD:275380 5/22 (23%)
leucine-rich repeat 201..224 CDD:275380 7/24 (29%)
leucine-rich repeat 225..258 CDD:275380 12/41 (29%)
leucine-rich repeat 259..310 CDD:275380 3/50 (6%)
leucine-rich repeat 311..344 CDD:275380 11/32 (34%)
leucine-rich repeat 345..368 CDD:275380 8/36 (22%)
leucine-rich repeat 369..390 CDD:275380 11/22 (50%)
leucine-rich repeat 393..417 CDD:275380 6/26 (23%)
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 5/18 (28%)
LRR 82..406 CDD:443914 99/378 (26%)
leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
leucine-rich repeat 156..179 CDD:275380 5/22 (23%)
leucine-rich repeat 180..204 CDD:275380 7/24 (29%)
leucine-rich repeat 205..228 CDD:275380 7/28 (25%)
leucine-rich repeat 229..252 CDD:275380 8/63 (13%)
leucine-rich repeat 253..276 CDD:275380 11/32 (34%)
leucine-rich repeat 277..300 CDD:275380 4/22 (18%)
leucine-rich repeat 301..322 CDD:275380 4/20 (20%)
leucine-rich repeat 326..350 CDD:275380 12/24 (50%)
leucine-rich repeat 351..373 CDD:275380 6/26 (23%)
LRRCT 382..434 CDD:214507 6/14 (43%)

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