DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18249 and Nepn

DIOPT Version :10

Sequence 1:NP_001163549.1 Gene:CG18249 / 40964 FlyBaseID:FBgn0037553 Length:559 Species:Drosophila melanogaster
Sequence 2:NP_001401899.1 Gene:Nepn / 309775 RGDID:1307755 Length:512 Species:Rattus norvegicus


Alignment Length:462 Identity:120/462 - (25%)
Similarity:195/462 - (42%) Gaps:113/462 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LSASCP-----DSFCSL---------SDRPVAYSATPALQLRELHLRNCSRQSITWLVLQLTPGL 81
            |.|:||     ||..|:         |..|   |.|..|.:....:::....::|.|:     .|
  Rat    17 LGANCPGRCSCDSLQSVQCYRLLEVPSGIP---STTRRLYISHSRIQHLQLSNLTQLL-----AL 73

  Fly    82 RTLVIRNCATYHISKESLRPVENLTSLQMQGTSLGVLRDQIFNAVP-RLEILQLSQNFIHTVHVA 145
            ...::....|..|..::.:.:..|.:|::....|    .::.:|:| .||:|:|:.|.|..:|.:
  Rat    74 EDFILLASGTESIENDTFKTLTTLKTLELWKNKL----RRVPSALPANLEVLKLNDNSICALHGS 134

  Fly   146 AFQGLSKLRLLGLQGNAIAEILSSTLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQTLLLNGNP 210
            .|:|||.|::|.|:.|.|:.:..|.|..|:                        .||:||::||.
  Rat   135 DFEGLSNLKVLELKNNLISSLSPSMLSSLV------------------------SLQSLLVDGNN 175

  Fly   211 LRILMPDVLG--SLPNLRLLDLG----HAAELEVMTLNLTNVQNLVLEGSSLSSLVIN--GGFIK 267
            :.    .|.|  |||||:.:.:.    |.....|.| :|.|:|.|...|:.|:.:.||  ...:.
  Rat   176 IE----SVTGPLSLPNLKYMSMEKNKLHLISGNVFT-SLQNLQFLSFSGNFLTKIPINLPKSLLS 235

  Fly   268 LQAGNNEL--------NHLQVGNKSSVIEMDLHGNLLNGNDTAALLRGMWNLQRLDLSKNRIE-- 322
            |:...|:|        .||:     ::..:.|..|||:..|.|.||.   ||..|:.|:||::  
  Rat   236 LKMERNQLKVVRFRDMRHLE-----NLSHLYLSENLLSSIDGAQLLT---NLTTLEASQNRLQML 292

  Fly   323 --ALPQHGSGLDASG-------TQELLILPSLKFLNLANNQLVRLPPESPILSSRLSYLDLSHNL 378
              .||.....||.|.       ..|...|..||.|.|.||.:......:....|:||.|.|..||
  Rat   293 PPRLPSRLQKLDCSSNFIQRVTAPEFQDLRDLKHLFLDNNVVSLFEAGALQKCSQLSNLALEQNL 357

  Fly   379 MLTLDVAI---------------------LRSLSVLKGLYVEGNRLNTINYQKLHEEHPDLSELG 422
            :|::.:.:                     ||.|..|:.|.:..|:::.::.:.| |..|.|..|.
  Rat   358 LLSIPLRLPKTLARLDLKGNAIQDMAERELRDLKQLQVLNLRNNKISALDLKAL-EGLPRLRHLY 421

  Fly   423 LHDNPWS 429
            |..|||:
  Rat   422 LDGNPWN 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18249NP_001163549.1 leucine-rich repeat 57..80 CDD:275380 2/22 (9%)
LRR 105..433 CDD:443914 103/374 (28%)
leucine-rich repeat 105..128 CDD:275380 5/23 (22%)
leucine-rich repeat 129..152 CDD:275380 10/22 (45%)
leucine-rich repeat 153..176 CDD:275380 8/22 (36%)
leucine-rich repeat 177..200 CDD:275380 0/22 (0%)
leucine-rich repeat 201..224 CDD:275380 10/24 (42%)
leucine-rich repeat 225..258 CDD:275380 10/36 (28%)
leucine-rich repeat 259..310 CDD:275380 15/60 (25%)
leucine-rich repeat 311..344 CDD:275380 12/43 (28%)
leucine-rich repeat 345..368 CDD:275380 6/22 (27%)
leucine-rich repeat 369..390 CDD:275380 9/41 (22%)
leucine-rich repeat 393..417 CDD:275380 5/23 (22%)
NepnNP_001401899.1 leucine-rich repeat 50..72 CDD:275380 3/26 (12%)
leucine-rich repeat 73..96 CDD:275380 3/22 (14%)
LRR 112..>428 CDD:443914 99/353 (28%)
leucine-rich repeat 118..141 CDD:275380 10/22 (45%)
leucine-rich repeat 142..165 CDD:275380 8/46 (17%)
leucine-rich repeat 166..187 CDD:275380 10/24 (42%)
leucine-rich repeat 188..211 CDD:275380 5/23 (22%)
leucine-rich repeat 212..235 CDD:275380 6/22 (27%)
leucine-rich repeat 236..256 CDD:275380 5/24 (21%)
leucine-rich repeat 257..278 CDD:275380 8/23 (35%)
leucine-rich repeat 279..299 CDD:275380 7/19 (37%)
leucine-rich repeat 300..323 CDD:275380 5/22 (23%)
leucine-rich repeat 324..347 CDD:275380 6/22 (27%)
leucine-rich repeat 348..371 CDD:275380 7/22 (32%)
leucine-rich repeat 372..392 CDD:275380 3/19 (16%)
leucine-rich repeat 393..416 CDD:275380 5/23 (22%)

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