DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and Gata3

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_579827.1 Gene:Gata3 / 85471 RGDID:621250 Length:444 Species:Rattus norvegicus


Alignment Length:623 Identity:205/623 - (32%)
Similarity:260/623 - (41%) Gaps:246/623 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LAHSHHSLSSGASSAGSSVGVGSALGGGGGSGLD------TSDMSAFYALESNGHHRRYYPSYHQ 106
            ::|.|.::.:|........|:|.       |.:|      |.::...:.::..|:|   .|||:.
  Rat    11 VSHHHPAVLNGQHPDTHHPGLGH-------SYMDPAQYPLTEEVDVLFNIDGQGNH---VPSYYG 65

  Fly   107 HT-----SRMPSTHASPQVCRPHFHTPLSPW------LTSEHKSFAPASAWSMGQFACPQEPQVE 160
            ::     .|.|.||...|||||.......||      |:|.|    .||.|::..|:   :..:.
  Rat    66 NSVRATVQRYPPTHHGSQVCRPPLLHGSLPWLDGGKALSSHH----TASPWNLSPFS---KTSIH 123

  Fly   161 HKLGQMG-------QSHQTTAAGQ---HSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQAT 215
            |  |..|       .|..:.|||.   |.|.||||||||.:||                      
  Rat   124 H--GSPGPLSVYPPASSSSLAAGHSSPHLFTFPPTPPKDVSPD---------------------- 164

  Fly   216 GSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQ 280
                           ||:   |..||:|                          |::|.:::..:
  Rat   165 ---------------PSL---STPGSAG--------------------------SARQDEKECLK 185

  Fly   281 QQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGGSGGGGGGGS 345
            .|.|...|....|:.|..|.::.                                      ||.|
  Rat   186 YQVQLPDSMKLETSHSRGSMTTL--------------------------------------GGAS 212

  Fly   346 GSGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSG 410
            .|..:..::|..|         ....::.:|..||:                             
  Rat   213 SSAHHPITTYPPY---------VPEYSSGLFPPSSL----------------------------- 239

  Fly   411 SSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECV 475
                   ||||   ..|.|..|                             |.|.|:|.||||||
  Rat   240 -------LGGS---PTGFGCKS-----------------------------RPKARSSTEGRECV 265

  Fly   476 NCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTT 540
            ||||||||||||||||||||||||||:||||||||||||||||      |||:|||||||||:||
  Rat   266 NCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL------SAARRAGTSCANCQTT 324

  Fly   541 TTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGH 605
            |||||||||:|:||||||||||||||:|||||||||||||||||:||||||.|.:         |
  Rat   325 TTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSSKSKKCKKV---------H 380

  Fly   606 LGMGDFKPLDPSKGFG-GGFSASMAQHGHLSSGLHPAH 642
            ..:.||   ..|..|. ...|..|:...|:|...|.:|
  Rat   381 DALEDF---PKSSSFNPAALSRHMSSLSHISPFSHSSH 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 45/46 (98%)
ZnF_GATA 473..517 CDD:238123 42/43 (98%)
ZnF_GATA 529..578 CDD:214648 44/48 (92%)
ZnF_GATA 533..583 CDD:238123 45/49 (92%)
Gata3NP_579827.1 ZnF_GATA 263..313 CDD:238123 48/55 (87%)
ZnF_GATA 317..367 CDD:238123 45/49 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8228
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 285 1.000 Inparanoid score I2772
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1240204at2759
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - otm46371
orthoMCL 1 0.900 - - OOG6_109197
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X385
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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