DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA10

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_172278.1 Gene:GATA10 / 837315 AraportID:AT1G08000 Length:308 Species:Arabidopsis thaliana


Alignment Length:151 Identity:43/151 - (28%)
Similarity:58/151 - (38%) Gaps:58/151 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 GSLSGHSGAGSNAGSNCL--DVKPVRTK----------------PRTSAEGRECVNCGATSTPLW 485
            ||||     ..|:||..|  .||.:|:|                ||.|..| |.|..|       
plant   132 GSLS-----TQNSGSQRLAFPVKGMRSKRRRPTTVRLSYLFPFEPRKSTPG-ESVTEG------- 183

  Fly   486 RRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRL-----TLQSLQSAAKRAG--TSCANCKTTTTT 543
                           ||    .:....|.||::     |..|...::|..|  ..|.:|:|.||.
plant   184 ---------------YY----SSEQHAKKKRKIHLITHTESSTLESSKSDGIVRICTHCETITTP 229

  Fly   544 LWRRNASG-EPVCNACGLYYK 563
            .||:..|| :.:|||||:.:|
plant   230 QWRQGPSGPKTLCNACGVRFK 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 8/46 (17%)
ZnF_GATA 473..517 CDD:238123 7/43 (16%)
ZnF_GATA 529..578 CDD:214648 16/38 (42%)
ZnF_GATA 533..583 CDD:238123 15/32 (47%)
GATA10NP_172278.1 ZnF_GATA 215..268 CDD:214648 16/36 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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