DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and AT1G05290

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_172021.2 Gene:AT1G05290 / 837025 AraportID:AT1G05290 Length:369 Species:Arabidopsis thaliana


Alignment Length:152 Identity:32/152 - (21%)
Similarity:50/152 - (32%) Gaps:39/152 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 WSMGQFACP---QEPQVEHKLGQMGQSHQTTAAGQHSFPFPP----TPPKDSTPD---SVQTGPS 200
            |.....:.|   ::.....::.|:.:.|....:.|......|    ..||||:..   |.:|...
plant   106 WEFSLGSLPLNNEDSSSSFEILQIFEDHTKNYSDQQVLTLQPDYLDIIPKDSSCSGFKSYETKED 170

  Fly   201 EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSAS----------GSSGSGTTHTST-PKQ 254
            ....:||.|...:|          ..||:|.  .|....          ....|.||.|:| |..
plant   171 IENVLMNTFDGAEA----------AVLDLKQ--YNPEEDLILTELIDELARDNSETTPTNTLPTS 223

  Fly   255 REGTAS------TTNSSSNSSS 270
            ..|.:|      .|.:.:|:||
plant   224 ASGMSSDIHKDYNTEALANASS 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123
ZnF_GATA 533..583 CDD:238123
AT1G05290NP_172021.2 CCT <326..350 CDD:461849
Blue background indicates that the domain is not in the aligned region.

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