DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and TOC1

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_200946.1 Gene:TOC1 / 836259 AraportID:AT5G61380 Length:618 Species:Arabidopsis thaliana


Alignment Length:234 Identity:47/234 - (20%)
Similarity:71/234 - (30%) Gaps:87/234 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   503 KMNGQNRPLIKPKRRLTL-----QSLQSAAKRA--GTSCANCKTTTTTLWRRNASGEPVCNACGL 560
            :.|||:.||:.....|.|     :..|..|...  .|..|...|..:|:.|.|....|:.|..| 
plant   280 RTNGQDPPLVDGNGSLHLHRGLAEKFQVVASEGINNTKQARRATPKSTVLRTNGQDPPLVNGNG- 343

  Fly   561 YYKLHNVNRPLTMK-----KEGIQTRNRKLSSKSKKKKGLGGGCLPIG----------------- 603
               .|:::|....|     .|||....:...|:..::....|..|..|                 
plant   344 ---SHHLHRGAAEKFQVVASEGINNTKQAHRSRGTEQYHSQGETLQNGASYPHSLERSRTLPTSM 405

  Fly   604 ---------GHLGMGDF---KPLDPSKGFGGGFSASMA----QHGHL------SSGLHPAHAHMH 646
                     |::.:...   :..|.|:..|.||||..|    .||.:      |:.:.|.:.|. 
plant   406 ESHGRNYQEGNMNIPQVAMNRSKDSSQVDGSGFSAPNAYPYYMHGVMNQVMMQSAAMMPQYGHQ- 469

  Fly   647 GSWYTGGMGALGASSGLQGGFSTAGSLSGAVVPHSQPYH 685
                                           :||.||.|
plant   470 -------------------------------IPHCQPNH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 5/13 (38%)
ZnF_GATA 533..583 CDD:238123 14/54 (26%)
TOC1NP_200946.1 psREC_PRR 21..124 CDD:381120
CCT 533..575 CDD:461849
Blue background indicates that the domain is not in the aligned region.

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