DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and COL5

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_568863.1 Gene:COL5 / 835872 AraportID:AT5G57660 Length:355 Species:Arabidopsis thaliana


Alignment Length:169 Identity:34/169 - (20%)
Similarity:66/169 - (39%) Gaps:23/169 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 HQTTAAGQHSFPF-PPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSI 233
            ||..|.|....|. ..|.|...|.:.........::.::||.:...:.|.|::.:|....:.|  
plant   194 HQNNAGGDSLVPVQTKTEPLPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVP-- 256

  Fly   234 QNGSASGSSGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNT 298
             :|:.:.|....|.          |:|||.....:||..::.:..:.:::::.:....|.    .
plant   257 -DGNTNNSVNRSTI----------TSSTTGGDHQASSMDREARVLRYREKRKNRKFEKTI----R 306

  Fly   299 SASSSAAAAS---LSAAVAASAATSSNGLFDGTAQAYSS 334
            .||..|.|.|   :....|....|.::.:|  .:..|:|
plant   307 YASRKAYAESRPRIKGRFAKRTETENDDIF--LSHVYAS 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123
ZnF_GATA 533..583 CDD:238123
COL5NP_568863.1 Bbox1_BBX-like 22..60 CDD:380879
Bbox1_BBX-like 60..103 CDD:380879
CCT 285..327 CDD:461849 7/45 (16%)
Blue background indicates that the domain is not in the aligned region.

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