DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA23

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_198045.1 Gene:GATA23 / 832751 AraportID:AT5G26930 Length:120 Species:Arabidopsis thaliana


Alignment Length:112 Identity:30/112 - (26%)
Similarity:53/112 - (47%) Gaps:29/112 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   514 PKRRLTLQSLQSAAK---RAGT--SCANCKTTTTTLWRRNASG-EPVCNACGLYYK--------- 563
            |::.|:..|...:.:   ..||  .|:.||||.|.:||...:| :.:|||||:.::         
plant     3 PRKLLSCSSSYVSVRMKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLG 67

  Fly   564 LHNV--NRPLTMKK--------EGIQTRNRKLSSKSKKKKGLGGGCL 600
            :|.:  ::.|..||        .|:..:.|: |.|.:::..|   ||
plant    68 IHIIRSHKSLASKKINLLSSSHGGVAVKKRR-SLKEEEQAAL---CL 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 1/2 (50%)
ZnF_GATA 473..517 CDD:238123 1/2 (50%)
ZnF_GATA 529..578 CDD:214648 20/70 (29%)
ZnF_GATA 533..583 CDD:238123 19/69 (28%)
GATA23NP_198045.1 ZnF_GATA 23..>62 CDD:214648 16/38 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.900

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