DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and CO

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_197088.1 Gene:CO / 831441 AraportID:AT5G15840 Length:373 Species:Arabidopsis thaliana


Alignment Length:215 Identity:44/215 - (20%)
Similarity:75/215 - (34%) Gaps:35/215 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 HASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQFACPQEP-QVEHKLGQMGQSHQTTAAGQH 178
            |::..:.|.|...|:.|...:...|.......|......|::. .|:.:.|:.|.......|   
plant    91 HSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVA--- 152

  Fly   179 SFPFPPTPPKDSTPDSVQTGPSEYQAVM--NAFMHQQATGSTSLTDASCALDIKPSIQNGSASGS 241
            |:.||.:...::..::......||..::  |:.|..:.||..|....:|      |:...|..|.
plant   153 SWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNC------SVPQTSYGGD 211

  Fly   242 SGSGTTHTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAA 306
                   ...|.:.|            .|...|...||..|...:..||.|..:.|.|.:.:|..
plant   212 -------RVVPLKLE------------ESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYI 257

  Fly   307 ASLSAAV----AASAATSSN 322
            :|:...|    .|...|:|:
plant   258 SSMETGVVPESTACVTTASH 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123
ZnF_GATA 533..583 CDD:238123
CONP_197088.1 Bbox1_BBX-like 19..62 CDD:380879
Bbox1_BBX-like 62..105 CDD:380879 3/13 (23%)
CCT 306..349 CDD:461849
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.