DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA3

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_195194.1 Gene:GATA3 / 829620 AraportID:AT4G34680 Length:269 Species:Arabidopsis thaliana


Alignment Length:91 Identity:25/91 - (27%)
Similarity:34/91 - (37%) Gaps:33/91 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 LDVKPVRTKPRTSAEG-------------------------------RECVNCGATSTPLWRRDG 489
            :.|||...:.|.|..|                               |.|.:||..:||.||...
plant   133 IPVKPRTKRSRNSLTGSRVWPLVSTNHQHAATEQLRKKKQETVLVFQRRCSHCGTNNTPQWRTGP 197

  Fly   490 TG-HYLCNACGLYYKMNGQNRPLIKP 514
            .| ..||||||:.:| :|:..|..:|
plant   198 VGPKTLCNACGVRFK-SGRLCPEYRP 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 18/43 (42%)
ZnF_GATA 533..583 CDD:238123
GATA3NP_195194.1 ZnF_GATA 180..226 CDD:214648 19/44 (43%)
Blue background indicates that the domain is not in the aligned region.

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