DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and APRR2

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_567548.1 Gene:APRR2 / 827527 AraportID:AT4G18020 Length:535 Species:Arabidopsis thaliana


Alignment Length:187 Identity:39/187 - (20%)
Similarity:58/187 - (31%) Gaps:60/187 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 LESNGHHRRYYPSYH----QHTSRM-------PSTHASPQVCRPHFHTPLS------PWLTSEHK 138
            ::|..:||....:|:    ||...|       |..: .|....|.:..||.      ||......
plant   365 IQSRENHRPNQRNYNVFQQQHRPVMAYPVWGLPGVY-PPGAIPPLWPPPLQSIGQPPPWHWKPPY 428

  Fly   139 SFAPASAWSMGQFACPQEPQVEHKLGQMGQSHQTTAAGQHSFP---------FPPTPPKDSTPDS 194
            .....:||     .||..|.|   .|.......|||.| ..:|         .|.:.|.:...|.
plant   429 PTVSGNAW-----GCPVGPPV---TGSYITPSNTTAGG-FQYPNGAETGFKIMPASQPDEEMLDQ 484

  Fly   195 V--------------QTGPSEYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGS 237
            |              ...|...::|:.....|   |.:::..:||.:       |||
plant   485 VVKEAISKPWLPLPLGLKPPSAESVLAELTRQ---GISAVPSSSCLI-------NGS 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123
ZnF_GATA 533..583 CDD:238123
APRR2NP_567548.1 REC_typeB_ARR-like 26..139 CDD:381121
PLN03162 <242..526 CDD:178707 34/173 (20%)
Blue background indicates that the domain is not in the aligned region.

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