DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and BME3

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_191041.1 Gene:BME3 / 824646 AraportID:AT3G54810 Length:322 Species:Arabidopsis thaliana


Alignment Length:345 Identity:68/345 - (19%)
Similarity:108/345 - (31%) Gaps:116/345 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 IQNGSASGSSGS----GTTHTSTPKQREGTASTTNSSSNSSSS-----------QQQQQQQQQQQ 282
            |..|...|.|.|    .|||..|.........::|::|:||..           ::.....::..
plant    30 IDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEETL 94

  Fly   283 QQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGGSG--------- 338
            .::::.|.:|    ||.:|||.:....|:.|:...::||:.....|......|..|         
plant    95 VEKKEDSFST----NTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGKHGRPRTKRPRP 155

  Fly   339 ----------GGGGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAA 393
                      ...||.|.........:.|.|:             .|........|.:.      
plant   156 PVQDKDRVKDNVCGGDSRLIIRIPKQFLSDHN-------------KMINKKKKKKAKIT------ 201

  Fly   394 QAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDV 458
                          .|.||||:              .:..|             |:|..|...:.
plant   202 --------------SSSSSSGI--------------DLEVN-------------GNNVDSYSSEQ 225

  Fly   459 KPVRTKPRTSAEGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKPKRRLTL-- 520
            .|:          |:|::|..|.||.||....| ..||||||:.|| :|:..|..:|....|.  
plant   226 YPL----------RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYK-SGRLFPEYRPAASPTFTP 279

  Fly   521 ----QSLQSAAKRAGTSCAN 536
                .|.:..|:.....|::
plant   280 ALHSNSHKKVAEMRNKRCSD 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 20/47 (43%)
ZnF_GATA 473..517 CDD:238123 19/44 (43%)
ZnF_GATA 529..578 CDD:214648 1/8 (13%)
ZnF_GATA 533..583 CDD:238123 1/4 (25%)
BME3NP_191041.1 ZnF_GATA 229..279 CDD:214648 21/50 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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