DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA14

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_190103.1 Gene:GATA14 / 823653 AraportID:AT3G45170 Length:204 Species:Arabidopsis thaliana


Alignment Length:103 Identity:28/103 - (27%)
Similarity:40/103 - (38%) Gaps:21/103 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 RECVNCGATSTPLWRRD--GTGHYLCNACGLYY---KMNGQNRPLIKPKRRLTLQSLQSAAKRAG 531
            :.|.:||...|||||..  |.| .||||||:.|   ::..:.||...|..:..:.|         
plant   115 KSCSHCGTRKTPLWREGPRGAG-TLCNACGMRYRTGRLLPEYRPASSPDFKP
NVHS--------- 169

  Fly   532 TSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNR 569
                |.......:.|...|..|  |:.|.....|:..:
plant   170 ----NFHRKVMEIRRERKSSPP--NSFGFSESYHSTRK 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 20/49 (41%)
ZnF_GATA 473..517 CDD:238123 20/48 (42%)
ZnF_GATA 529..578 CDD:214648 7/41 (17%)
ZnF_GATA 533..583 CDD:238123 7/37 (19%)
GATA14NP_190103.1 ZnF_GATA 114..161 CDD:214648 19/46 (41%)
ZnF_GATA 116..165 CDD:238123 20/49 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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