DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment grn and GATA1

DIOPT Version :9

Sequence 1:	NP_001262366.1	Gene:	grn / 40962	FlyBaseID:	FBgn0001138	Length:	712	Species:	Drosophila melanogaster
Sequence 2:	NP_189047.1	Gene:	GATA1 / 821990	AraportID:	AT3G24050	Length:	274	Species:	Arabidopsis thaliana

Alignment Length:	142	Identity:	42/142 - (29%)
Similarity:	60/142 - (42%)	Gaps:	21/142 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly   408 HSGSSSGLHGLGGSVGGTAG---------MGSMSGNSGGAGSLSGHSGAGSN------AGSNCLD 457
            ||.:::..:..|||.|.||.         |....|....|.:.|.....|..      .|:....
plant   112 HSSTTTTSNSSGGSNGSTAVATTTTTPTIMSCCVGFKAPAKARSKRRRTGRRDLRVLWTGNEQGG 176

  Fly   458 VKPVRTKPRTSAE---GRECVNCGATSTPLWRRDGTG-HYLCNACGLYYKMNGQNRPLIKPKRRL 518
            ::..:|....:|.   ||:|.:|||..||.||....| ..||||||:.|| :|:..|..:|....
plant   177 IQKKKTMTVAAAALIMGRKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYK-SGRLVPEYRPANSP 240

  Fly   519 TLQS-LQSAAKR 529
            |..: |.|.:.|
plant   241 TFTAELHSNSHR 252

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
grn	NP_001262366.1	ZnF_GATA	470..517	CDD:214648	22/50 (44%)
		ZnF_GATA	473..517	CDD:238123	20/44 (45%)
		ZnF_GATA	529..578	CDD:214648	1/1 (100%)
		ZnF_GATA	533..583	CDD:238123
GATA1	NP_189047.1	ZnF_GATA	193..243	CDD:214648	23/50 (46%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5641
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900