DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA15

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_566290.1 Gene:GATA15 / 819859 AraportID:AT3G06740 Length:149 Species:Arabidopsis thaliana


Alignment Length:143 Identity:40/143 - (27%)
Similarity:52/143 - (36%) Gaps:45/143 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 SMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTG-HY 493
            ||........::..||.:.||..              .|.|.:.|..||.:.|||||....| ..
plant    13 SMESKLTSVDAIEEHSSSSSNEA--------------ISNEKKSCAICGTSKTPLWRGGPAGPKS 63

  Fly   494 LCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCK-------------------T 539
            ||||||:      :||     |:|.||.|.:|..|:..:...|.|                   .
plant    64 LCNACGI------RNR-----KKRRTLISNRSEDKKKKSHNRNPKFGDSLKQRLMELGREVMMQR 117

  Fly   540 TTTTLWRRNASGE 552
            :|....|||..||
plant   118 STAENQRRNKLGE 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 19/47 (40%)
ZnF_GATA 473..517 CDD:238123 18/44 (41%)
ZnF_GATA 529..578 CDD:214648 8/43 (19%)
ZnF_GATA 533..583 CDD:238123 8/39 (21%)
GATA15NP_566290.1 ZnF_GATA 41..>77 CDD:214648 18/46 (39%)
GATA 43..77 CDD:278735 18/44 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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