DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and GATA2

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_182031.1 Gene:GATA2 / 819112 AraportID:AT2G45050 Length:264 Species:Arabidopsis thaliana


Alignment Length:252 Identity:54/252 - (21%)
Similarity:73/252 - (28%) Gaps:88/252 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 LFDGTAQAYSSGGSGGGGGGGSGSGGYDTSSYASYHH-----AAAHH-----------QAAAVAA 372
            |.|.:.:...|..|.||....:.|..:......|:||     :|.||           .||.:..
plant    17 LLDFSNEDIFSASSSGGSTAATSSSSFPPPQNPSFHHHHLPSSADHHSFLHDICVPSDDAAHLEW 81

  Fly   373 ANMFQSSSVA----------------------AAAVRHSMAAA-----------QAHHHHHHHHS 404
            .:.|...|.|                      ....:.|.|.|           ::.|...|..:
plant    82 LSQFVDDSFADFPANPLGGTMTSVKTETSFPGKPRSKRSRAPAPFAGTWSPMPLESEHQQLHSAA 146

  Fly   405 GHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSA 469
            ........||    ||..||.....|.|..:.|.|.                             
plant   147 KFKPKKEQSG----GGGGGGGRHQSSSSETTEGGGM----------------------------- 178

  Fly   470 EGRECVNCGATSTPLWRRDGTG-HYLCNACGLYYK---MNGQNRPLIKPKRRLTLQS 522
              |.|.:|.:..||.||....| ..||||||:.:|   :..:.||...|...||..|
plant   179 --RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHS 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 18/50 (36%)
ZnF_GATA 473..517 CDD:238123 17/47 (36%)
ZnF_GATA 529..578 CDD:214648
ZnF_GATA 533..583 CDD:238123
GATA2NP_182031.1 ZnF_GATA 179..228 CDD:214648 18/48 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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