DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and gata1b

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_021334219.2 Gene:gata1b / 564960 ZFINID:ZDB-GENE-081104-43 Length:383 Species:Danio rerio


Alignment Length:401 Identity:154/401 - (38%)
Similarity:199/401 - (49%) Gaps:89/401 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 TSASSSAAAASLSAAVAA--SAATSSNGLFDGTAQAYSSGGSGG----GGGGGSGSGGYDTSSYA 356
            |.|..|...:..|:.|.:  :||...:.::    ..|||...|.    .|..||....|..||.:
Zfish    49 TDADHSGLPSLFSSPVHSRPTAAFQHSPVY----PIYSSPFLGNLSWLEGSSGSSLTNYFPSSPS 109

  Fly   357 SYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGS 421
            |:|.:     |.:.|:::.|.|||              |.........|...|....||..|..|
Zfish   110 SWHSS-----AFSKASSSSFSSSS--------------ARPEQKESVKGERSSPPGGGLFPLNSS 155

  Fly   422 VGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPR-------TSAEGRECVNCGA 479
            :.|      :..:|....:.....|..:...|:.|...|....|:       :..:.||||||||
Zfish   156 LSG------VYPHSHSTKTHYSPYGGHTQDYSSSLLYAPATFTPKLCSKMNFSPLDARECVNCGA 214

  Fly   480 TSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTL 544
            |:||||||||||||||||||||:||||||||||:||:|..:      :||.||.||||:|:||||
Zfish   215 TATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIRPKKRPVV------SKRIGTQCANCQTSTTTL 273

  Fly   545 WRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMG 609
            ||||:||||||||||||:|||||||||.||||||||||||:|||::|                  
Zfish   274 WRRNSSGEPVCNACGLYFKLHNVNRPLAMKKEGIQTRNRKVSSKNRK------------------ 320

  Fly   610 DFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLS 674
                       |..|| :|.::.:......|| ...|...|:....|||.       :|.:|. |
Zfish   321 -----------GKKFS-TMEENLYCDFPKTPA-CDQHFDMYSQSPAALGV-------YSHSGQ-S 364

  Fly   675 GAVVPHSQPYH 685
            .|.:|:  |||
Zfish   365 TAYLPY--PYH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 40/43 (93%)
ZnF_GATA 533..583 CDD:238123 43/49 (88%)
gata1bXP_021334219.2 GAT1 136..>247 CDD:227928 50/116 (43%)
ZnF_GATA 208..254 CDD:238123 41/45 (91%)
ZnF_GATA 262..313 CDD:238123 44/50 (88%)

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