DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and gata1b

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_021334219.1 Gene:gata1b / 564960 ZFINID:ZDB-GENE-081104-43 Length:372 Species:Danio rerio


Alignment Length:401 Identity:154/401 - (38%)
Similarity:199/401 - (49%) Gaps:89/401 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 TSASSSAAAASLSAAVAA--SAATSSNGLFDGTAQAYSSGGSGG----GGGGGSGSGGYDTSSYA 356
            |.|..|...:..|:.|.:  :||...:.::    ..|||...|.    .|..||....|..||.:
Zfish    38 TDADHSGLPSLFSSPVHSRPTAAFQHSPVY----PIYSSPFLGNLSWLEGSSGSSLTNYFPSSPS 98

  Fly   357 SYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGS 421
            |:|.:     |.:.|:::.|.|||              |.........|...|....||..|..|
Zfish    99 SWHSS-----AFSKASSSSFSSSS--------------ARPEQKESVKGERSSPPGGGLFPLNSS 144

  Fly   422 VGGTAGMGSMSGNSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPR-------TSAEGRECVNCGA 479
            :.|      :..:|....:.....|..:...|:.|...|....|:       :..:.||||||||
Zfish   145 LSG------VYPHSHSTKTHYSPYGGHTQDYSSSLLYAPATFTPKLCSKMNFSPLDARECVNCGA 203

  Fly   480 TSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTL 544
            |:||||||||||||||||||||:||||||||||:||:|..:      :||.||.||||:|:||||
Zfish   204 TATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIRPKKRPVV------SKRIGTQCANCQTSTTTL 262

  Fly   545 WRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMG 609
            ||||:||||||||||||:|||||||||.||||||||||||:|||::|                  
Zfish   263 WRRNSSGEPVCNACGLYFKLHNVNRPLAMKKEGIQTRNRKVSSKNRK------------------ 309

  Fly   610 DFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLS 674
                       |..|| :|.::.:......|| ...|...|:....|||.       :|.:|. |
Zfish   310 -----------GKKFS-TMEENLYCDFPKTPA-CDQHFDMYSQSPAALGV-------YSHSGQ-S 353

  Fly   675 GAVVPHSQPYH 685
            .|.:|:  |||
Zfish   354 TAYLPY--PYH 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 41/46 (89%)
ZnF_GATA 473..517 CDD:238123 40/43 (93%)
ZnF_GATA 529..578 CDD:214648 41/48 (85%)
ZnF_GATA 533..583 CDD:238123 43/49 (88%)
gata1bXP_021334219.1 ZnF_GATA 197..243 CDD:238123 41/45 (91%)
ZnF_GATA 251..302 CDD:238123 44/50 (88%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 1.000 Domainoid score I8335
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D511840at33208
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X385
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.880

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