DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and gata5

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_031749920.1 Gene:gata5 / 496852 XenbaseID:XB-GENE-484906 Length:437 Species:Xenopus tropicalis


Alignment Length:388 Identity:143/388 - (36%)
Similarity:175/388 - (45%) Gaps:108/388 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 QQQQQQQQQQQQQSSS---NTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGG 336
            :.|..:.|:..:.|.:   |||:|:|....:...|..:              ||           
 Frog     3 ENQHWKMQKDCRLSGTFYYNTTSSANLPGVAGRKAQPV--------------LF----------- 42

  Fly   337 SGGGGGGGSGSGGYDTSSYASYHHAAAHHQAA-AVAAANMFQSSSVAAAAVRHSMAAAQAHH--- 397
                       |.|....|.|....|.|.|.| :...:|...|:......|..|...|....   
 Frog    43 -----------GSYRRIMYPSLALTANHAQPAYSHDPSNFLHSTGSPPVYVPTSRMPAMLQSLPY 96

  Fly   398 ------HHHHHHSGHH----------HSGSSSGLHGLGG-------SVGGTAG----------MG 429
                  .|..||.|:|          |:.::|..|...|       .||..:.          ||
 Frog    97 LQSCDTAHQGHHLGNHPGWAQTANESHTFNASSPHTPSGFPYSHSPPVGNASAREGAYQSPLIMG 161

  Fly   430 SMS----GNS----GGAGSLSGHSGA--------GSNAGSNCLDVKPVRTKP--RTS-------- 468
            |.:    |||    |...|...:.||        |...||....::..:..|  |:|        
 Frog   162 SSARDQYGNSLVRTGSYPSPYSYVGADMPPSWATGHFEGSMLHSLQGRQPLPGRRSSLEFLEEFH 226

  Fly   469 AEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTS 533
            .||||||||||.|||||||||||||||||||||:||||.|||||||::||      |:::|||..
 Frog   227 GEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQKRL------SSSRRAGLC 285

  Fly   534 CANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLG 596
            |.||.|:||||||||:.|||||||||||.|||.|.|||.||||.||||.||..:.||.|...|
 Frog   286 CTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKNVSKGKTSTG 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 42/46 (91%)
ZnF_GATA 473..517 CDD:238123 39/43 (91%)
ZnF_GATA 529..578 CDD:214648 37/48 (77%)
ZnF_GATA 533..583 CDD:238123 38/49 (78%)
gata5XP_031749920.1 GATA-N 49..219 CDD:398818 37/169 (22%)
ZnF_GATA 231..275 CDD:238123 39/43 (91%)
ZnF_GATA 286..336 CDD:238123 38/49 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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