DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and gata5

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_031749920.1 Gene:gata5 / 496852 XenbaseID:XB-GENE-484906 Length:437 Species:Xenopus tropicalis


Alignment Length:388 Identity:143/388 - (36%)
Similarity:175/388 - (45%) Gaps:108/388 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 QQQQQQQQQQQQQSSS---NTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQAYSSGG 336
            :.|..:.|:..:.|.:   |||:|:|....:...|..:              ||           
 Frog     3 ENQHWKMQKDCRLSGTFYYNTTSSANLPGVAGRKAQPV--------------LF----------- 42

  Fly   337 SGGGGGGGSGSGGYDTSSYASYHHAAAHHQAA-AVAAANMFQSSSVAAAAVRHSMAAAQAHH--- 397
                       |.|....|.|....|.|.|.| :...:|...|:......|..|...|....   
 Frog    43 -----------GSYRRIMYPSLALTANHAQPAYSHDPSNFLHSTGSPPVYVPTSRMPAMLQSLPY 96

  Fly   398 ------HHHHHHSGHH----------HSGSSSGLHGLGG-------SVGGTAG----------MG 429
                  .|..||.|:|          |:.::|..|...|       .||..:.          ||
 Frog    97 LQSCDTAHQGHHLGNHPGWAQTANESHTFNASSPHTPSGFPYSHSPPVGNASAREGAYQSPLIMG 161

  Fly   430 SMS----GNS----GGAGSLSGHSGA--------GSNAGSNCLDVKPVRTKP--RTS-------- 468
            |.:    |||    |...|...:.||        |...||....::..:..|  |:|        
 Frog   162 SSARDQYGNSLVRTGSYPSPYSYVGADMPPSWATGHFEGSMLHSLQGRQPLPGRRSSLEFLEEFH 226

  Fly   469 AEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTS 533
            .||||||||||.|||||||||||||||||||||:||||.|||||||::||      |:::|||..
 Frog   227 GEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQKRL------SSSRRAGLC 285

  Fly   534 CANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLG 596
            |.||.|:||||||||:.|||||||||||.|||.|.|||.||||.||||.||..:.||.|...|
 Frog   286 CTNCHTSTTTLWRRNSEGEPVCNACGLYMKLHGVPRPLAMKKESIQTRKRKPKNVSKGKTSTG 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 39/43 (91%)
ZnF_GATA 533..583 CDD:238123 38/49 (78%)
gata5XP_031749920.1 GATA-N 49..219 CDD:461628 37/169 (22%)
ZnF_GATA 231..275 CDD:238123 39/43 (91%)
ZnF_GATA 286..336 CDD:238123 38/49 (78%)

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