DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and pnr

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:520 Identity:174/520 - (33%)
Similarity:209/520 - (40%) Gaps:174/520 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 SSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSA---AAASLSAAVAASAATSSNGLFD 326
            |...|:|.||..:.........|:.:.:.||::||||:||   ||..:..:.|.:|.|.      
  Fly     6 SDGDSTSDQQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTD------ 64

  Fly   327 GTAQAYSSGGSGGGGGGGSGSGGYD---------TSSYASYHHAAAHHQAAAVAAANMFQSSSVA 382
                 .::.||....|.|.|..||.         ..|...|:|.|||..:|  ||.|.:.:....
  Fly    65 -----LAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNHVAAHFGSA--AAQNAWTTEGFG 122

  Fly   383 AAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGHSGA 447
            :|                               |....|......|||..         |.:..:
  Fly   123 SA-------------------------------HAQFYSPNAAVMMGSWR---------SAYDPS 147

  Fly   448 GSNAGSNCLDVKPVRTKPRTSA------EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNG 506
            |..           |:.|..||      ||||||||||.|||||||||||||||||||||:||||
  Fly   148 GFQ-----------RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNG 201

  Fly   507 QNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPL 571
            .|||||||.:||.   ..:|.:|.|..|.||.|.||||||||..|||||||||||||||.|||||
  Fly   202 MNRPLIKPSKRLV---SATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPL 263

  Fly   572 TMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMG---------------DFKP-------- 613
            .|:|:|||||.||     .||.|.|..   :|...|.|               |.||        
  Fly   264 AMRKDGIQTRKRK-----PKKTGSGSA---VGAGTGSGTGSTLEAIKECKEEHDLKPSLSLERHS 320

  Fly   614 -----LDPSKGFG------GGFSASM-------------------------------------AQ 630
                 .|...|..      |..||..                                     .|
  Fly   321 LSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQQQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQ 385

  Fly   631 HGH---LSSG-LHPAHAHMHGS----WYTGGMGALGASSGLQGGFS--TAGSLSGAVVPHSQPYH 685
            |||   .||| .|.:..|:||:    .||.|..:.|.|:......|  |....:|...||.|.:|
  Fly   386 HGHSMTSSSGQAHLSARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHH 450

  Fly   686  685
              Fly   451  450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 42/46 (91%)
ZnF_GATA 473..517 CDD:238123 39/43 (91%)
ZnF_GATA 529..578 CDD:214648 36/48 (75%)
ZnF_GATA 533..583 CDD:238123 39/49 (80%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 42/47 (89%)
ZnF_GATA 168..212 CDD:238123 39/43 (91%)
ZnF_GATA 223..270 CDD:214648 35/46 (76%)
ZnF_GATA 226..276 CDD:238123 39/49 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438451
Domainoid 1 1.000 68 1.000 Domainoid score I6377
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D66908at33392
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
98.880

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