DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and GATAd

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001260326.1 Gene:GATAd / 34395 FlyBaseID:FBgn0032223 Length:842 Species:Drosophila melanogaster


Alignment Length:703 Identity:137/703 - (19%)
Similarity:214/703 - (30%) Gaps:249/703 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 HHRRYYPSYHQHTSRMP-----------------------STHASPQVCRPHFHTPLSPWLTSEH 137
            ||.:.....| :|..:|                       ||....|....|.|.        |:
  Fly   113 HHHQNQTKIH-YTPSVPSAADAKSSERERQCQLESDIAERSTVFKSQSSSDHEHI--------EY 168

  Fly   138 KSFAPASAWSMGQFACPQEPQVEHKLGQMGQSHQ----------TTAAG------QHSFPFPPTP 186
            ....|:.:.|:.|.....||..|.:..|...:.|          |..:|      :|......:|
  Fly   169 SGETPSPSASLSQSQTKSEPMREEEEHQHNHNQQSGREETSVNTTNISGTDNYGKEHGRDDSSSP 233

  Fly   187 ---------------PKDSTPD-----------------------------------SVQTGPSE 201
                           |.|..|:                                   :::..|::
  Fly   234 HLTFQIFNCLSIKALPNDGLPNVVCGDCRQKLDSFEKFRTMAHNSQIALKEFLNISKNLRPDPND 298

  Fly   202 YQAVMNAFM--HQQATGSTSLTDASC-----------------ALDIKPSIQNGSASGSSGSGTT 247
            .:..::|.:  ..:|..:.:||:.|.                 .||.|..|.|......|...:.
  Fly   299 LETKLDAILKASSEAIAAKALTELSTFSKVKYDHSKLDSSIQPGLDRKIEISNQEMPAHSLYPSL 363

  Fly   248 HTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTA--------------SSNT 298
            ..|...:.:..:...:.||:|....:.|:....::.:..|....|.|              .||.
  Fly   364 FKSITMKSDQKSKAMSGSSHSQFDSKLQKDSDIEKYENLQQQLETAAVLMDISKKIVISPPCSNP 428

  Fly   299 SAS--SSAAAASLSAAVAASAATSS-NGLFDGTAQAYSSGGSGGGGGGGSGSGGYDTS------S 354
            .:.  |:|...|:.::|..|...|: |.:.||..                    .|.|      .
  Fly   429 QSPCFSAAVDTSIKSSVIKSKRPSNQNEIQDGVE--------------------IDLSVKKQKND 473

  Fly   355 YASYHHAAAHHQAAAVAAANM---------FQSSSVAAAAVRHSMAAAQAHHHHHHHHSGH-HHS 409
            |::..:||..|........::         ||:.|:....|..|...::|    ....:|. ..|
  Fly   474 YSNQRNAAPIHHFCQTPMLDIQSHLRSEEDFQNYSITINQVGGSDFKSKA----PKASTGSLLDS 534

  Fly   410 GSSSGLHGL----GGSVGGTAGMGSMSGNSGGAGSLS------GHSGAGSNAGSNCLDV------ 458
            |.||..|.|    ..|:.......|:|.:.....:.:      ..|.|.|...:....:      
  Fly   535 GDSSDSHKLEMDITSSINDRKTPDSLSSDHATDAATTQLWQALARSAAKSKEDNPASQIFRNMMS 599

  Fly   459 -----------------------------------KPVRTKPR--TSAEGRECVNCGATSTPLWR 486
                                               ||.|.|..  |..:..:.||...|.|    
  Fly   600 QPFAFPVPSTVSFTKVPEEPIALLKDLSEAQSSKSKPCRRKQSFPTKTDCIDVVNENVTDT---- 660

  Fly   487 RDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASG 551
                           |..:.......|.||.:.|.:....|:: ..||:||.|.|||:|||:..|
  Fly   661 ---------------YTTSEATPDDKKDKRNINLFNAIPGAQK-DMSCSNCGTLTTTIWRRSVRG 709

  Fly   552 EPVCNACGLYYKLHNVNRPLTMKKEGIQTRNR--KLSSKSKKKKGLGGGCLPI 602
            |.||||||||:|||.||||.:|:::.|.||.|  |...:||||......|..|
  Fly   710 EMVCNACGLYFKLHGVNRPHSMRRDTIHTRRRRPKELERSKKKHKQMSSCSSI 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 7/46 (15%)
ZnF_GATA 473..517 CDD:238123 7/43 (16%)
ZnF_GATA 529..578 CDD:214648 29/48 (60%)
ZnF_GATA 533..583 CDD:238123 32/49 (65%)
GATAdNP_001260326.1 zf-AD <228..284 CDD:214871 4/55 (7%)
ZnF_GATA 688..736 CDD:214648 29/48 (60%)
ZnF_GATA 691..742 CDD:238123 32/50 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438454
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

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