DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and grn

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:XP_061498140.1 Gene:grn / 3290975 VectorBaseID:AGAMI1_007281 Length:564 Species:Anopheles gambiae


Alignment Length:718 Identity:362/718 - (50%)
Similarity:399/718 - (55%) Gaps:184/718 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAHSHHSLSSGASSAGSS 65
            |||||.||  ||||||:.|||                    ||.|:|.|..|.:           
Mosquito     1 MDMTSAAE--ARSWYDNQRLG--------------------GSPGTSAALGHQT----------- 32

  Fly    66 VGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRYYP-SYHQHTSRMPSTHASPQVCRPHFHTPL 129
                        :.:|.|:|:.||.|| ||.|||||| ||..|.|||.|:|.||||||||||.||
Mosquito    33 ------------AAVDPSEMNPFYPLE-NGSHRRYYPTSYGPHASRMTSSHVSPQVCRPHFHGPL 84

  Fly   130 SPWLTSEHKSFAPASAWSMGQFACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDS 194
            | ||:...|..|.:|||. ..|||||:||  .||.|:    ||...|||.|.|||||||||||||
Mosquito    85 S-WLSDPPKPIASSSAWG-SPFACPQDPQ--DKLTQV----QTGQTGQHLFSFPPTPPKDSTPDS 141

  Fly   195 VQTGPSEYQAVMNAFMHQQATGS-----------------TSLTDASCALDIKPSIQNGSASGSS 242
            |||.|:||||.:||||||...||                 |..|..||.||:||.:..|:.|..|
Mosquito   142 VQTAPAEYQATINAFMHQAQVGSSNAVGGGGVGGGVGGGGTGQTADSCGLDVKPCLTGGNGSSGS 206

  Fly   243 GSGTT--HTSTPKQREGTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAA 305
            |.|.:  ..:.|||||||.::....:.||..                ..|:|.....|.:.....
Mosquito   207 GGGGSGGGQNQPKQREGTGNSGTVGNGSSGG----------------PGSHTNGGQPTGSGLGGV 255

  Fly   306 AASLSAAVAASAATSSNGLFDGTAQAYSSGGSGG--GGGGGSGSGGYDTSSYASYHHAAAHHQAA 368
            .....:...|.|          ||..:||||.||  .|.|.|..||||||.| .|||   .|.||
Mosquito   256 HGGGQSGAGAVA----------TAGGHSSGGGGGLFDGSGQSAYGGYDTSGY-GYHH---QHAAA 306

  Fly   369 AVAAANMFQSSSVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSG 433
            :...:|           .|.:|            :|.|                           
Mosquito   307 SFGQSN-----------PRPAM------------NSPH--------------------------- 321

  Fly   434 NSGGAGSLSGHSGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNAC 498
                                    :||.|||.|||||||||||||||||||||||||||||||||
Mosquito   322 ------------------------MKPQRTKARTSAEGRECVNCGATSTPLWRRDGTGHYLCNAC 362

  Fly   499 GLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK 563
            |||||||||||||||||||| :.||||||:||||||||||||||||||||..|||||||||||||
Mosquito   363 GLYYKMNGQNRPLIKPKRRL-VSSLQSAARRAGTSCANCKTTTTTLWRRNQGGEPVCNACGLYYK 426

  Fly   564 LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGD-FKPLDPSKGFGGGFSAS 627
            |||||||||||||||||||||||||||||||:.|.|||:||||  || .||||....|.|.|..|
Mosquito   427 LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGIPGSCLPLGGHL--GDLMKPLDHKPSFPGAFPGS 489

  Fly   628 MAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLSGAVVPHSQPYHLGLSSMG 692
            |.||.|||.||||||.||||.|||.||||||.|.|||.||..||||.|.||||||.|||||:||.
Mosquito   490 MGQHSHLSGGLHPAHTHMHGGWYTTGMGALGTSGGLQNGFGGAGSLGGGVVPHSQSYHLGLNSML 554

  Fly   693 TWR 695
            .:|
Mosquito   555 AFR 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 43/43 (100%)
ZnF_GATA 533..583 CDD:238123 47/49 (96%)
grnXP_061498140.1 None

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