DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and gata5

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_571310.2 Gene:gata5 / 30482 ZFINID:ZDB-GENE-980526-340 Length:383 Species:Danio rerio


Alignment Length:473 Identity:155/473 - (32%)
Similarity:194/473 - (41%) Gaps:128/473 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 SVQTGPSEYQAVMNAFMHQQATGSTSL--TDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQRE 256
            ::.:.||.|......::|..|:....:  |.....|...|.:|...:|..:...::|.:.|:   
Zfish     6 ALSSNPSPYAHDSGNYIHPSASSPVYVPTTRVPAMLQTLPYLQTCESSHQAHGISSHHAWPQ--- 67

  Fly   257 GTASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSS 321
              ..|.|||.|..|               .......:.|.:...|||...   .||.......|:
Zfish    68 --TGTDNSSFNPGS---------------PHPPPGFSYSHSPPVSSSTGR---DAAYQNPLMLSN 112

  Fly   322 NGLFD--GTAQAYSSGGSGGGGGGGSGSGGYDTSSYASYHHAAAHHQAAAVAAANMFQSSSVAAA 384
            .|..|  |:|...|.|||            | :|.||:|                  .|..:|.:
Zfish   113 GGRADQYGSALVRSVGGS------------Y-SSPYAAY------------------MSPEMATS 146

  Fly   385 AVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGM--GSMSGNSGGAGSLSGHSGA 447
                                                   .|.|.  |.|.|..|..|:|.|.   
Zfish   147 ---------------------------------------WTPGPFDGGMIGLQGRQGTLPGR--- 169

  Fly   448 GSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLI 512
              .:..:.||..|        .|||||||||:.|||||||||||||||||||||:||||.|||||
Zfish   170 --RSSIDMLDDLP--------CEGRECVNCGSISTPLWRRDGTGHYLCNACGLYHKMNGINRPLI 224

  Fly   513 KPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEG 577
            ||::|     |||.::|||..|.||.|:|||||||||.|||||||||||.|||.|.|||.||||.
Zfish   225 KPQKR-----LQSTSRRAGLCCTNCHTSTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKES 284

  Fly   578 IQTRNRKLSSKSKKKKGLGGG---------CLPIGGHLGMGDFKPLDPSKGFGGGFSASMAQHGH 633
            ||||.||  .|..|.|...|.         .||:..:......:|...:..:.|....|:.|...
Zfish   285 IQTRKRK--PKMPKTKSSSGSTVSGATSPTSLPVSENASTIKSEPSIAASPYAGQTVVSVTQAST 347

  Fly   634 LSSGLHPAHAHMHGSWYT 651
            .......||..:....||
Zfish   348 QLDSASSAHVDIKYEDYT 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 41/46 (89%)
ZnF_GATA 473..517 CDD:238123 38/43 (88%)
ZnF_GATA 529..578 CDD:214648 38/48 (79%)
ZnF_GATA 533..583 CDD:238123 39/49 (80%)
gata5NP_571310.2 GATA-N 1..173 CDD:283099 49/264 (19%)
ZnF_GATA 182..228 CDD:214648 41/45 (91%)
ZnF_GATA 185..236 CDD:238123 42/55 (76%)
ZnF_GATA 236..285 CDD:214648 38/48 (79%)
ZnF_GATA 241..291 CDD:238123 39/49 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.