DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and med-1

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001366746.1 Gene:med-1 / 191705 WormBaseID:WBGene00003180 Length:174 Species:Caenorhabditis elegans


Alignment Length:56 Identity:21/56 - (37%)
Similarity:29/56 - (51%) Gaps:7/56 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   534 CANCKTTTTTLWRRNASGEPV-CNACGLYYKLHNVNRPLT------MKKEGIQTRN 582
            |:||..|.|..||...|.|.: ||||.:|.:.:|..||:|      .:|..:|..|
 Worm   114 CSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETN 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648
ZnF_GATA 473..517 CDD:238123
ZnF_GATA 529..578 CDD:214648 19/50 (38%)
ZnF_GATA 533..583 CDD:238123 21/56 (38%)
med-1NP_001366746.1 ZnF_GATA 109..160 CDD:214648 18/45 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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