DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and end-3

DIOPT Version :10

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_506480.1 Gene:end-3 / 191631 WormBaseID:WBGene00001311 Length:242 Species:Caenorhabditis elegans


Alignment Length:73 Identity:24/73 - (32%)
Similarity:36/73 - (49%) Gaps:1/73 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   513 KPKRRLTLQSLQS-AAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKE 576
            ||.|:.:...::. :.....:||:||....|.|||||..||..||.|.||.::....||..:..:
 Worm   157 KPARKASKNKIKKISTMHINSSCSNCGCRETKLWRRNEQGETECNPCNLYERVKGHKRPQHLWNK 221

  Fly   577 GIQTRNRK 584
            ....|.|:
 Worm   222 PAAKRRRR 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 473..517 CDD:238123 2/3 (67%)
ZnF_GATA 533..583 CDD:238123 20/49 (41%)
end-3NP_506480.1 ZnF_GATA 178..229 CDD:238123 20/50 (40%)

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