DRSC/TRiP Functional Genomics Resources

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Protein Alignment grn and elt-3

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001367208.1 Gene:elt-3 / 181503 WormBaseID:WBGene00001251 Length:317 Species:Caenorhabditis elegans


Alignment Length:85 Identity:38/85 - (44%)
Similarity:53/85 - (62%) Gaps:11/85 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   510 PLI---KP--KRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNR 569
            ||:   ||  ||...:|..|::.      |:||||..|||||||..|...||||.||::.:|..|
 Worm   221 PLVAEPKPMKKRMAAVQCHQNSI------CSNCKTRETTLWRRNGEGGVECNACNLYFRKNNRKR 279

  Fly   570 PLTMKKEGIQTRNRKLSSKS 589
            ||:::|:||..|||:..::|
 Worm   280 PLSLRKDGIMKRNRRPRNES 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 5/11 (45%)
ZnF_GATA 473..517 CDD:238123 5/11 (45%)
ZnF_GATA 529..578 CDD:214648 24/48 (50%)
ZnF_GATA 533..583 CDD:238123 27/49 (55%)
elt-3NP_001367208.1 ZnF_GATA 243..294 CDD:238123 28/56 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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