DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment grn and Gata4

DIOPT Version :9

Sequence 1:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster
Sequence 2:NP_001297539.1 Gene:Gata4 / 14463 MGIID:95664 Length:442 Species:Mus musculus


Alignment Length:507 Identity:177/507 - (34%)
Similarity:222/507 - (43%) Gaps:132/507 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 PSEYQA-VMNAFMHQQATGSTSL-----TDASCALDIKPSIQNGSASGSSGSGTTHTSTPKQREG 257
            |..|:| ...||||.....|:.:     ...|..|.:. .:|.|.::.::|:             
Mouse    15 PGAYEAGGPGAFMHSAGAASSPVYVPTPRVPSSVLGLS-YLQGGGSAAAAGT------------- 65

  Fly   258 TASTTNSSSNSSSSQQQQQQQQQQQQQQQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSN 322
            |:..::.:..|.:....||......|...:.::.|....:...|......||:||.||:||..  
Mouse    66 TSGGSSGAGPSGAGPGTQQGSPGWSQAGAEGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAARE-- 128

  Fly   323 GLFDGTAQAYSSGGSGGGGG-------GGSGSGGYDTSSYASY-HHAAAHHQAAAVAAANMFQSS 379
                  |.||.|||...|.|       |..|..|..:|.|.:| ....|...|||.|:|..|.|.
Mouse   129 ------AAAYGSGGGAAGAGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSP 187

  Fly   380 SVAAAAVRHSMAAAQAHHHHHHHHSGHHHSGSSSGLHGLGGSVGGTAGMGSMSGNSGGAGSLSGH 444
            .                                  ||                       ||.|.
Mouse   188 V----------------------------------LH-----------------------SLPGR 195

  Fly   445 SGAGSNAGSNCLDVKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNR 509
            :..|.:  .|.:|:..      ..:||||||||||.|||||||||||||||||||||:||||.||
Mouse   196 ANPGRH--PNLVDMFD------DFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINR 252

  Fly   510 PLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMK 574
            |||||:|||      ||::|.|.|||||:|||||||||||.|||||||||||.|||.|.|||.|:
Mouse   253 PLIKPQRRL------SASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMR 311

  Fly   575 KEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLH 639
            |||||||.||..:.:|.|...|    |.|        :.|.||.|...|.|::.......|..:.
Mouse   312 KEGIQTRKRKPKNLNKSKTPAG----PAG--------ETLPPSSGASSGNSSNATSSSSSSEEMR 364

  Fly   640 PAHAHMHGSWYTGGMGALGASSGLQGGFSTAGSLSGAVVPHSQPYHLGLSSM 691
            |....      .|.....|.||.:...|||   :||    |....|..||::
Mouse   365 PIKTE------PGLSSHYGHSSSMSQTFST---VSG----HGPSIHPVLSAL 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 42/46 (91%)
ZnF_GATA 473..517 CDD:238123 39/43 (91%)
ZnF_GATA 529..578 CDD:214648 39/48 (81%)
ZnF_GATA 533..583 CDD:238123 42/49 (86%)
Gata4NP_001297539.1 GATA-N 1..204 CDD:368398 56/269 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..107 7/59 (12%)
ZnF_GATA 216..266 CDD:238123 44/55 (80%)
ZnF_GATA 270..321 CDD:238123 42/50 (84%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 314..393 29/103 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.930

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